Difference between revisions of "Topics"

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(Typical procedures)
(Using XDS: add link to PDF)
 
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* [[XSCALE]]
 
* [[XSCALE]]
 
* [[XDSCONV]]
 
* [[XDSCONV]]
* [[VIEW]]
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* [[VIEW]] (obsolete)
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* [[XDS-Viewer]] open-source [[VIEW]] replacement
 
* [[XDSSTAT]] (this is not part of the XDS package)
 
* [[XDSSTAT]] (this is not part of the XDS package)
 
* [[Jiffies]] (little helpful scripts)
 
* [[Jiffies]] (little helpful scripts)
 +
* [[SIM_MX]] (this is not part of the XDS package)
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* [[adxv]] (this is not part of the XDS package)
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* [[XDSGUI]] (this is not part of the XDS package)
  
 
== Using XDS ==
 
== Using XDS ==
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* [https://www.youtube.com/watch?v=3WU9NrILECo XDS and XDSGUI. SBGrid Webinar by Kay Diederichs, May 2020] [https://strucbio.biologie.uni-konstanz.de/pub/Crystallographic_data_processing_with_XDS_using_XDSGUI.pdf slides of the talk]
 
* [[XDS.INP]]
 
* [[XDS.INP]]
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* [[generate_XDS.INP]] - quick procedure to obtain XDS.INP for MarCCD, ADSC, Pilatus, ... detectors
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* [[Tutorial(First_Steps)|Tutorial]] Quick beginner's walk-through if you just want to get going.
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* [https://{{SERVERNAME}}/pub/MWhitley_CSHL-2018_XDS-Tutorial.pdf Matthew J. Whitley's excellent tutorial] about XDS processing with [[XDSGUI]], from the 2018 CSHL X-Ray Methods in Structural Biology Course.
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* [[FAQ]]
 
* [[Processing]]
 
* [[Processing]]
* [[IDXREF]] with subtopics [[Obtaining ORGX ORGY]], [[Ice rings]], [[Reindexing]]
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* [[IDXREF]] with subtopics [[Obtaining ORGX ORGY]], [[Ice rings]], [[Indexing]], [[Reindexing]]
* [[CORRECT]], see also [[Reindexing]]
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* [[CORRECT]]
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* [[Small molecules]] how to process difficult datasets, or those with few reflections
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* worked-out '''examples''': see in particular the five projects ([[2QVO]], [[3CSL]], [[simulated-1g1c]], [[1Y13]] and [[2VB1]]) at the bottom of [[Quality Control]].
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* [[XDSGUI]]
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* [https://www.youtube.com/watch?v=XBgqiEXQR-0 Principles of data processing with XDS.] Video recorded at SBGrid/NE-CAT workshop 2014; the PDF is [https://strucbio.biologie.uni-konstanz.de/pub/Principles_of_data_processing_with_XDS.pdf here]. The sound is poor.
  
 
== Typical procedures ==
 
== Typical procedures ==
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== XDS development ==
 
== XDS development ==
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* [[INTEGRATE]] - how does INTEGRATE work?
 
* [[Quality Control]]
 
* [[Quality Control]]
 
* [[Known Bugs]]
 
* [[Known Bugs]]
 
* [[Wishlist]]
 
* [[Wishlist]]
 
* [[Features that are not officially documented]]
 
* [[Features that are not officially documented]]
 +
 +
== external Links ==
 +
 +
* [https://xia2.github.io/ xia2] Automated Data Reduction

Latest revision as of 18:21, 15 June 2020

Programs

Using XDS

Typical procedures

XDS development

external Links

  • xia2 Automated Data Reduction