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* [[XSCALE]] | * [[XSCALE]] | ||
* [[XDSCONV]] | * [[XDSCONV]] | ||
* [[VIEW]] | * [[VIEW]] (obsolete) | ||
* [[XDS-Viewer]] open-source [[VIEW]] replacement | |||
* [[XDSSTAT]] (this is not part of the XDS package) | * [[XDSSTAT]] (this is not part of the XDS package) | ||
* [[Jiffies]] (little helpful scripts) | * [[Jiffies]] (little helpful scripts) | ||
* [[SIM_MX]] (this is not part of the XDS package) | |||
* [[adxv]] (this is not part of the XDS package) | |||
* [[XDSGUI]] (this is not part of the XDS package) | |||
== Using XDS == | == Using XDS == | ||
* [[XDS.INP]] | * [[XDS.INP]] | ||
* [[generate_XDS.INP]] - quick procedure to obtain XDS.INP for MarCCD, ADSC, Pilatus detectors | |||
* [[Tutorial(First_Steps)|Tutorial]] Quick beginner's walk-through if you just want to get going. | |||
* [[FAQ]] | |||
* [[Processing]] | * [[Processing]] | ||
* [[IDXREF]] with subtopics [[Obtaining ORGX ORGY]], [[Ice rings]], [[Indexing]], [[Reindexing]] | * [[IDXREF]] with subtopics [[Obtaining ORGX ORGY]], [[Ice rings]], [[Indexing]], [[Reindexing]] | ||
* [[CORRECT]], see | * [[CORRECT]] | ||
* [[Small molecules]] how to process difficult datasets, or those with few reflections | |||
* worked-out '''examples''': see in particular the five projects ([[2QVO]], [[3CSL]], [[simulated-1g1c]], [[1Y13]] and [[2VB1]]) at the bottom of [[Quality Control]]. | |||
* [[XDSGUI]] | |||
== Typical procedures == | == Typical procedures == | ||
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== external Links == | == external Links == | ||
* [ | * [https://xia2.github.io/ xia2] Automated Data Reduction | ||
Revision as of 15:37, 22 October 2019
Programs
- XDS
- XSCALE
- XDSCONV
- VIEW (obsolete)
- XDS-Viewer open-source VIEW replacement
- XDSSTAT (this is not part of the XDS package)
- Jiffies (little helpful scripts)
- SIM_MX (this is not part of the XDS package)
- adxv (this is not part of the XDS package)
- XDSGUI (this is not part of the XDS package)
Using XDS
- XDS.INP
- generate_XDS.INP - quick procedure to obtain XDS.INP for MarCCD, ADSC, Pilatus detectors
- Tutorial Quick beginner's walk-through if you just want to get going.
- FAQ
- Processing
- IDXREF with subtopics Obtaining ORGX ORGY, Ice rings, Indexing, Reindexing
- CORRECT
- Small molecules how to process difficult datasets, or those with few reflections
- worked-out examples: see in particular the five projects (2QVO, 3CSL, simulated-1g1c, 1Y13 and 2VB1) at the bottom of Quality Control.
- XDSGUI
Typical procedures
- Space group determination, see also Reindexing and Indexing
- Optimization, subtopics MINIMUM_ZETA, Aliens, see also Ice rings
- Determining VALUE_RANGE_FOR_TRUSTED_DETECTOR_PIXELS
- Tips and Tricks
- Scaling with SCALA
XDS development
- INTEGRATE - how does INTEGRATE work?
- Quality Control
- Known Bugs
- Wishlist
- Features that are not officially documented
external Links
- xia2 Automated Data Reduction