Cookies help us deliver our services. By using our services, you agree to our use of cookies. More information
Open main menu

XDSwiki β


Main Page

804 bytes added, 13:06, 10 July 2019
no edit summary
== What is XDS, and how to obtain it? ==
XDS is a program package written for the "reduction" of 2-dimensional data images ("frames") obtained from crystals irradiated with monochromatic X-rays. The package mainly consists of the programs [[XDS]] (which processes a single dataset), [[XSCALE]] (for scaling of several datasets) , and [[XDSCONV]] (for conversion of a reflection output file to other formats) . Additional auxiliary programs are [[cellparm]], [[2cbf]] and [[VIEWmerge2cbf]] (. [[XDS-viewer]], for visualizingframes, can be downloaded separately (see [[Installation]]).
The author of the program package is Wolfgang Kabsch (Wolfgang dot Kabsch at mpimf-heidelberg dot mpg dot de); since 2007 I contribute code, handle and fix bugs and teach XDS usage.
The program is free for academic use, and can be downloaded from http://wwwxds.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/downloading.html (if the download from that site fails, there's a copy at ftp://turn5.biologie.uni-konstanz.de/xds ).
Documentation is at http://wwwxds.mpimf-heidelberg.mpg.de/~kabschhtml_doc/xds XDS.html or [http://strucbio.biologie.uni-konstanz.de/~dikay/XDS_html_doc/index.html here].
Since version 30-Jan-2009, the format of the control images written by [[XDS]] (and [[XSCALE]]) [http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/Release_Notes.html changed]. An open-source viewer [[XDS-Viewer]] is [http://xds-viewer.sourceforge.net available]for visualization of the control images written by [[XDS]] (and [[XSCALE]]). Latest versions of [[Adxv]] can also visualize XDS output files.
There is another program available, which serves to produce additional output of tables and plots. This is not part of the official XDS package; its name is [[XDSSTAT]] (written and distributed by Kay Diederichs). Yet another program that produces frame-wise (for XDS_ASCII.HKL) or dataset-wise (for XSCALE.HKL) CC<sub>1/2</sub> statistics is [[XDSCC12]].
[[XDSguiXDSGUI]], a graphical user interface, serves to help using XDS.
== Links to XDS papers by Wolfgang Kabsch ==
== Contributing to the Wiki ==
* The MediaWiki software used here works in the same way as the well-known Wikipedia. This means that anyone can read articles, but for editing existing pages, and creating new ones (this happens automatically when you click on a [[red link]]), you need a [[Creating an account|userid and password]]. Due to the amount of spam created by abuse of Google mail accounts, we are no longer allowing account creation for @gmail.com email addresses.
* Short introduction to [[creating an article]]
* [[Topics]] as an attempt to provide a hierarchy of pages
* new articles: [[adxvSSX]], [[SIM_MXXscale_isocluster]], [[FAQLIB]],  == News ==[[Problemsxds_nonisomorphism]],  [[CORRECTxscale_isocluster]]
== See also ==
[httpftp://smbturn5.slacbiologie.stanforduni-konstanz.edude/facilitiespub/software/xds/ A Quick XDS_Yamashita_ACA2014.pdf Keitaro Yamashita's talk about XDS Tutorial for SSRLprocessing given at ACA2014].
[http://strucbio.biologie.uni-konstanz.de/~dikay/XDS_Diederichs_ACA2011.pdf XDS talk given at ACA2011]
[https://www.researchgate.net/publication/236032099_Practical_use_of_XDS_%28for_data_reduction%29._Presented_in_April_4th_2013_Dept._of_Biochemical_Sciences_Sapienza_University_of_Rome?ev=prf_pub Practical use of XDS (for data reduction) - by Fulvio Saccoccia, Presented in April, 4th 2013; Dept. of Biochemical Sciences and Istituto Pasteur-Fondazione Cenci Bolognetti - Sapienza University of Rome. ]
[http://www.helmholtz-berlin.de/forschung/oe/funkma/soft-matter/forschung/bessy-mx/xdsapp/index_en.html XDSAPP, a graphical user interface for automatic data processing with XDS]