21
edits
Generate XDS.INP: Difference between revisions
replaced script with rev. 0.10: setting link to image directory if path is too long.
(use od instead of catmar/mccd_xdsparams.pl) |
(replaced script with rev. 0.10: setting link to image directory if path is too long.) |
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<pre> | <pre> | ||
#!/bin/bash | #!/bin/bash | ||
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# tested with some datasets from ALS, SSRL, SLS and ESRF; only MARCCD, ADSC/SMV, PILATUS 6M detectors; | # tested with some datasets from ALS, SSRL, SLS and ESRF; only MARCCD, ADSC/SMV, PILATUS 6M detectors; | ||
# for other detectors, values marked with XXX must be manually filled in. | # for other detectors, values marked with XXX must be manually filled in. | ||
# revision 0.10 . Tim Gruene 7/2010 - set link 'images' to image directory if path exceeds 72 characters | |||
# | # | ||
# usage: e.g. generate_XDS.INP "frms/mydata_1_???.img" | # usage: e.g. generate_XDS.INP "frms/mydata_1_???.img" | ||
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# see how we are called: | # see how we are called: | ||
NAME_TEMPLATE_OF_DATA_FRAMES="$1" | NAME_TEMPLATE_OF_DATA_FRAMES="$1" | ||
# check that the image template name does not exceed 72 characters | |||
# and set a link if necessary | |||
if [ ${#1} -gt 72 ]; then | |||
TMP_PATH=$(/bin/ls -C1 $1 | head -1) | |||
TMP_FILENAME=$(basename ${TMP_PATH}) | |||
if [ ${#TMP_FILENAME} -gt 65 ]; then | |||
echo "---> Unable to proceed: image filename " | |||
echo "---> \"${TMP_FILENAME}\"" | |||
echo "---> exceeds 72 characters." | |||
echo "---> Please rename files or set links." | |||
exit | |||
else | |||
echo "---> Warning: Template name exceeds 72 characters. Setting link \"image\"" | |||
echo " to image directory" | |||
TMP_DIRNAME=$(dirname ${TMP_PATH}) | |||
if [ -e "images" ]; then | |||
echo "*** Error: The file or directory \"images\" already exists. Please remove" | |||
echo " and re-run." | |||
exit | |||
else | |||
ln -s ${TMP_DIRNAME} images | |||
fi | |||
NAME_TEMPLATE_OF_DATA_FRAMES="images/${1##/*/}" | |||
echo " Using template filename \"${NAME_TEMPLATE_OF_DATA_FRAMES}\"" | |||
fi | |||
fi | |||
# list frames matching the wildcards in NAME_TEMPLATE_OF_DATA_FRAMES | # list frames matching the wildcards in NAME_TEMPLATE_OF_DATA_FRAMES | ||
# don't accept the "direct beam" shot at SLS/Pilatus | # don't accept the "direct beam" shot at SLS/Pilatus | ||
ls -C1 $1 | grep -v "_00000.cbf" > tmp1 || exit 1 | /bin/ls -C1 $1 | grep -v "_00000.cbf" > tmp1 || exit 1 | ||
# we can continue - the frames are found | # we can continue - the frames are found | ||
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echo After running xds, inspect at least BKGPIX.cbf and FRAME.cbf with XDS-Viewer! | echo After running xds, inspect at least BKGPIX.cbf and FRAME.cbf with XDS-Viewer! | ||
rm -f tmp1 tmp2 | rm -f tmp1 tmp2 | ||
</pre> | </pre> | ||