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| | | |
| <pre> | | <pre> |
− |
| |
| #!/bin/bash | | #!/bin/bash |
| | | |
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| # tested with some datasets from ALS, SSRL, SLS and ESRF; only MARCCD, ADSC/SMV, PILATUS 6M detectors; | | # tested with some datasets from ALS, SSRL, SLS and ESRF; only MARCCD, ADSC/SMV, PILATUS 6M detectors; |
| # for other detectors, values marked with XXX must be manually filled in. | | # for other detectors, values marked with XXX must be manually filled in. |
| + | # revision 0.10 . Tim Gruene 7/2010 - set link 'images' to image directory if path exceeds 72 characters |
| # | | # |
| # usage: e.g. generate_XDS.INP "frms/mydata_1_???.img" | | # usage: e.g. generate_XDS.INP "frms/mydata_1_???.img" |
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| # see how we are called: | | # see how we are called: |
| NAME_TEMPLATE_OF_DATA_FRAMES="$1" | | NAME_TEMPLATE_OF_DATA_FRAMES="$1" |
| + | |
| + | # check that the image template name does not exceed 72 characters |
| + | # and set a link if necessary |
| + | if [ ${#1} -gt 72 ]; then |
| + | TMP_PATH=$(/bin/ls -C1 $1 | head -1) |
| + | TMP_FILENAME=$(basename ${TMP_PATH}) |
| + | if [ ${#TMP_FILENAME} -gt 65 ]; then |
| + | echo "---> Unable to proceed: image filename " |
| + | echo "---> \"${TMP_FILENAME}\"" |
| + | echo "---> exceeds 72 characters." |
| + | echo "---> Please rename files or set links." |
| + | exit |
| + | else |
| + | echo "---> Warning: Template name exceeds 72 characters. Setting link \"image\"" |
| + | echo " to image directory" |
| + | TMP_DIRNAME=$(dirname ${TMP_PATH}) |
| + | if [ -e "images" ]; then |
| + | echo "*** Error: The file or directory \"images\" already exists. Please remove" |
| + | echo " and re-run." |
| + | exit |
| + | else |
| + | ln -s ${TMP_DIRNAME} images |
| + | fi |
| + | NAME_TEMPLATE_OF_DATA_FRAMES="images/${1##/*/}" |
| + | echo " Using template filename \"${NAME_TEMPLATE_OF_DATA_FRAMES}\"" |
| + | fi |
| + | fi |
| | | |
| # list frames matching the wildcards in NAME_TEMPLATE_OF_DATA_FRAMES | | # list frames matching the wildcards in NAME_TEMPLATE_OF_DATA_FRAMES |
| # don't accept the "direct beam" shot at SLS/Pilatus | | # don't accept the "direct beam" shot at SLS/Pilatus |
− | ls -C1 $1 | grep -v "_00000.cbf" > tmp1 || exit 1 | + | /bin/ls -C1 $1 | grep -v "_00000.cbf" > tmp1 || exit 1 |
| | | |
| # we can continue - the frames are found | | # we can continue - the frames are found |
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| echo After running xds, inspect at least BKGPIX.cbf and FRAME.cbf with XDS-Viewer! | | echo After running xds, inspect at least BKGPIX.cbf and FRAME.cbf with XDS-Viewer! |
| rm -f tmp1 tmp2 | | rm -f tmp1 tmp2 |
| + | |
| | | |
| </pre> | | </pre> |