21
edits
Changes
replaced script with rev. 0.10: setting link to image directory if path is too long.
<pre>
<pre>
#!/bin/bash
#!/bin/bash
# tested with some datasets from ALS, SSRL, SLS and ESRF; only MARCCD, ADSC/SMV, PILATUS 6M detectors;
# tested with some datasets from ALS, SSRL, SLS and ESRF; only MARCCD, ADSC/SMV, PILATUS 6M detectors;
# for other detectors, values marked with XXX must be manually filled in.
# for other detectors, values marked with XXX must be manually filled in.
# revision 0.10 . Tim Gruene 7/2010 - set link 'images' to image directory if path exceeds 72 characters
#
#
# usage: e.g. generate_XDS.INP "frms/mydata_1_???.img"
# usage: e.g. generate_XDS.INP "frms/mydata_1_???.img"
# see how we are called:
# see how we are called:
NAME_TEMPLATE_OF_DATA_FRAMES="$1"
NAME_TEMPLATE_OF_DATA_FRAMES="$1"
# check that the image template name does not exceed 72 characters
# and set a link if necessary
if [ ${#1} -gt 72 ]; then
TMP_PATH=$(/bin/ls -C1 $1 | head -1)
TMP_FILENAME=$(basename ${TMP_PATH})
if [ ${#TMP_FILENAME} -gt 65 ]; then
echo "---> Unable to proceed: image filename "
echo "---> \"${TMP_FILENAME}\""
echo "---> exceeds 72 characters."
echo "---> Please rename files or set links."
exit
else
echo "---> Warning: Template name exceeds 72 characters. Setting link \"image\""
echo " to image directory"
TMP_DIRNAME=$(dirname ${TMP_PATH})
if [ -e "images" ]; then
echo "*** Error: The file or directory \"images\" already exists. Please remove"
echo " and re-run."
exit
else
ln -s ${TMP_DIRNAME} images
fi
NAME_TEMPLATE_OF_DATA_FRAMES="images/${1##/*/}"
echo " Using template filename \"${NAME_TEMPLATE_OF_DATA_FRAMES}\""
fi
fi
# list frames matching the wildcards in NAME_TEMPLATE_OF_DATA_FRAMES
# list frames matching the wildcards in NAME_TEMPLATE_OF_DATA_FRAMES
# don't accept the "direct beam" shot at SLS/Pilatus
# don't accept the "direct beam" shot at SLS/Pilatus
ls -C1 $1 | grep -v "_00000.cbf" > tmp1 || exit 1
/bin/ls -C1 $1 | grep -v "_00000.cbf" > tmp1 || exit 1
# we can continue - the frames are found
# we can continue - the frames are found
echo After running xds, inspect at least BKGPIX.cbf and FRAME.cbf with XDS-Viewer!
echo After running xds, inspect at least BKGPIX.cbf and FRAME.cbf with XDS-Viewer!
rm -f tmp1 tmp2
rm -f tmp1 tmp2
</pre>
</pre>