Difference between revisions of "Scripts and interfaces"

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== autoxds ==
 
== autoxds ==
  
script developed by Michel Fodje at Canadian Macromolecular Crystallography Facility (Saskatoon) and in use e.g. at SSRL (Stanford) . See [A Quick XDS Tutorial for SSRL http://smb.slac.stanford.edu/facilities/software/xds/]. Download: http://smb.slac.stanford.edu/templates/xds/autoxds ; download http://smb.slac.stanford.edu/templates/xds/mccd_xdsparams.pl , too!
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script in use at SSRL (Stanford) . See [A Quick XDS Tutorial for SSRL http://smb.slac.stanford.edu/facilities/software/xds/]. Download: http://smb.slac.stanford.edu/templates/xds/autoxds ; download http://smb.slac.stanford.edu/templates/xds/mccd_xdsparams.pl , too!
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== autoXDS ==
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script developed by Michel Fodje at Canadian Macromolecular Crystallography Facility (Saskatoon)
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== xdsme ==
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by Pierre Legrand at SOLEIL (French synchrotron): web address: http://code.google.com/p/xdsme/
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Here's a short description of the program:
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xdsme is a collection of python scripts made to simplify the processing of crystal
 +
diffraction images with the XDS Program Package. Provided that the diffraction
 +
parameters are well recorded in the diffraction image headers, XDS data processing
 +
can be started with a simple command line like:
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 +
$ xdsme pos1_1_???.img
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Supported detector image format include: ADSC, MARCCD, MAR345 + experimental
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for PILATUS, SATURN, RAXIS and MAR555.
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* xdsme (XDS.py), xscale.py and xdsconv.py for data processing, scaling and file conversion.
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* XOalign.py for the goniometer setting calculation (to work with different type of goniometer including Kappa, mini-Kappa, Euler...).
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* xds2mos.py or xds2dnz.py ... (for conversion of orientation matrices)

Revision as of 21:00, 27 February 2010

There is a number of script and graphical interfaces for the XDS package.

XDSi

the first published interface, by Petri Kursula (XDSi: a graphical interface for the data processing program XDS. (2004) J. Appl. Cryst. 37, 347-348). http://cc.oulu.fi/~pkursula/xdsi.html gives 2007 as last modification date.

XDSi

Tcl/Tk interface by Michael Krug (Welte/Diederichs lab). Unfortunately same name. Can process multiple datasets.

ixds

python script programmed at BESSY.

autoxds

script in use at SSRL (Stanford) . See [A Quick XDS Tutorial for SSRL http://smb.slac.stanford.edu/facilities/software/xds/]. Download: http://smb.slac.stanford.edu/templates/xds/autoxds ; download http://smb.slac.stanford.edu/templates/xds/mccd_xdsparams.pl , too!

autoXDS

script developed by Michel Fodje at Canadian Macromolecular Crystallography Facility (Saskatoon)

xdsme

by Pierre Legrand at SOLEIL (French synchrotron): web address: http://code.google.com/p/xdsme/

Here's a short description of the program:

xdsme is a collection of python scripts made to simplify the processing of crystal diffraction images with the XDS Program Package. Provided that the diffraction parameters are well recorded in the diffraction image headers, XDS data processing can be started with a simple command line like:

$ xdsme pos1_1_???.img

Supported detector image format include: ADSC, MARCCD, MAR345 + experimental for PILATUS, SATURN, RAXIS and MAR555.

  • xdsme (XDS.py), xscale.py and xdsconv.py for data processing, scaling and file conversion.
  • XOalign.py for the goniometer setting calculation (to work with different type of goniometer including Kappa, mini-Kappa, Euler...).
  • xds2mos.py or xds2dnz.py ... (for conversion of orientation matrices)