Installation: Difference between revisions

Installation (view source)

Revision as of 22:33, 21 April 2021

17 bytes removed , 21 April 2021

→‎WSL2

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 === WSL2 ===
-CCP4 7.1 including coot-0.9.5 works on Ubuntu 20.04 LTS under WSL2.
+CCP4 7.1 including coot-0.9.5 works in a Ubuntu 20.04 LTS machine under WSL2.
-After installation of WSL2 according to [https://docs.microsoft.com/de-de/windows/wsl/install-win10 https://docs.microsoft.com/windows/wsl/install-win10], I installed [https://mobaxterm.mobatek.net/ MobaXterm] as the Xserver. When the Windows firewall asked whether it should allow MobaXterm communciation, I answered "yes" for both private and public networks.
+[https://docs.microsoft.com/windows/wsl/install-win10 After installation of WSL2], I installed [https://mobaxterm.mobatek.net/ MobaXterm] as the Xserver. When the Windows firewall asked whether it should allow MobaXterm communciation, I answered "yes" for both private and public networks.
-Before you start CCP4 installation,
+If you want to install CCP4 as a regular user, you need (as this is Linux):
+ sudo mkdir /opt/xtal
-sudo mkdir /opt/xtal
+ sudo chown MYWSLNAME /opt/xtal
-sudo chown MYWSLNAME /opt/xtal
 A few libraries are needed before CCP4 installation (tcsh is needed by CCP4, the others are mostly graphics libraries):
   sudo apt install tcsh libqt5opengl5 libqt5printsupport5 libqt5gui5 libxcb-render0 libxcb-shm0 libglu1-mesa libgomp1
-Let the CCP4 installation "modify the environment" for you. My ~/.bashrc has the line (which the CCP4 installation created):
+When installing CCP4, let it "modify the environment" for you. If you forgot this, insert a line into your ~/.bashrc :
   source /opt/xtal/ccp4-7.1/bin/ccp4.setup-sh
-I created a file in the Windows filesystem (replace MYUSERNAME with your Windows username):
+afterwards. I created a file in the Windows filesystem (replace MYUSERNAME with your Windows username):
   cd /mnt/c/Users/MYUSERNAME/
   echo "[wsl2]" > .wslconfig
   echo "kernelCommandLine = vsyscall=emulate" >> .wslconfig
-to make the shelx* programs happy (see https://github.com/microsoft/WSL/issues/4694 ), and to make "vsyscall=emulate" appear in /proc/cmdline. After creating the file, WSL2 must be restarted with "wsl.exe --shutdown" (or the machine booted).
+to make the shelx* programs work (see https://github.com/microsoft/WSL/issues/4694 ), and to make "vsyscall=emulate" appear in /proc/cmdline. After creating the file, WSL2 must be restarted with "wsl.exe --shutdown" (or the machine booted).
 Performance of coot is good enough for occasional work. XDSGUI and multi-threaded XDS work as expected. For reading .h5 files, the NEGGIA plugin works correctly, but the DURIN plugin currently crashes (a [https://github.com/DiamondLightSource/durin/issues/22 bug] has been reported).