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→infrastructure: tools and helper programs for generate_XDS.INP and XDSGUI, and libraries
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You may repeat this, as root, every now and then, to update the programs. | You may repeat this, as root, every now and then, to update the programs. | ||
=== | === tools and helper programs for [[generate_XDS.INP]] and [[XDSGUI]], and libraries === | ||
* check and installation of Unix tools for [[generate_XDS.INP]] is shown at [[Generate_XDS.INP#Dependencies]] | * check and installation of Unix tools for [[generate_XDS.INP]] is shown at [[Generate_XDS.INP#Dependencies]] | ||
* helper programs for [[XDSGUI]] are listed and discussed at [[XDSGUI#Dependencies]]. Nota bene: XDSGUI needs [[generate_XDS.INP]] unless you already have a working XDS.INP. | * helper programs for [[XDSGUI]] are listed and discussed at [[XDSGUI#Dependencies]]. Nota bene: XDSGUI needs [[generate_XDS.INP]] unless you already have a working XDS.INP. | ||
Since XDSGUI depends on graphics packages that may need to be installed, you can check the xdsgui binary with | Since XDSGUI depends on graphics packages that may need to be installed, you can check the xdsgui binary with | ||
ldd `which xdsgui` | ldd `which xdsgui` | grep found | ||
and that should show you the libraries it | and that should show you the libraries it it didn't find. Your friendly system administrator will then work out the specific commands to install those libraries. | ||
For RedHat-type distributions, that would typically be e.g. | |||
yum provides libXfixes.so.3 | |||
the output of which will tell you that this is in the libXfixes RPM. | |||
If in the case of Ubuntu you don't know the name of the package that provides a certain library, the | |||
sudo apt-file search <name-of-library> | |||
command should find it for you (where <code><name-of-library></code> could e.g. be <code>libGLU.so.1</code>). This needs a one-time installation by | |||
sudo apt install apt-file | |||
sudo apt-file update | |||
Ubuntu 18.04: if libQtOpenGL.so.4 is missing, use <code>sudo apt install libqt4-opengl</code>. | Ubuntu 18.04: if libQtOpenGL.so.4 is missing, use <code>sudo apt install libqt4-opengl</code>. | ||
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sudo apt update | sudo apt update | ||
sudo apt install libqt4-opengl | sudo apt install libqt4-opengl | ||
But it would be better to use the [https://strucbio.biologie.uni-konstanz.de/pub/linux_bin/xdsgui_qt5 Qt5 binary of XDSGUI]. | |||
<code>xxdiff</code> is likely available for your distribution - google for it, or try e.g. | <code>xxdiff</code> is likely available for your distribution - google for it, or try e.g. | ||
yum -y install xxdiff | yum -y install xxdiff | ||
on RHEL6/CentOS6/SL6 systems, or | on RHEL6/CentOS6/SL6 systems, or | ||
apt | apt install xxdiff | ||
on Ubuntu. If Ubuntu 20.04 doesn't find it, use the latest from http://archive.ubuntu.com/ubuntu/pool/universe/x/xxdiff/ | on Ubuntu. If Ubuntu 20.04 doesn't find it, use the latest from http://archive.ubuntu.com/ubuntu/pool/universe/x/xxdiff/ | ||