Difference between revisions of "Adxv"

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The adxv program can be downloaded from http://www.scripps.edu/tainer/arvai/adxv.html
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The ADXV program can be downloaded from http://www.scripps.edu/tainer/arvai/adxv.html
  
  
== What if the Image Window doesn't refresh correctly under NX? ==
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== What if the Image Window doesn't refresh correctly under x2go ? ==
  
This is a bug in NX and should be fixed in newer versions of the NX server.
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https://wiki.x2go.org/doku.php X2go is based on an old version of the NoMachine NX libraries. These had a bug which must be worked around.
  
Depending on the version of NX you have try adding one of the following options:
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You may have try adding an option to /etc/x2go/x2goagent.options ; earlier versions of the NX software required the following addition to /usr/NX/etc/node.cfg :
  
    /usr/NX/etc/node.cfg
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AgentExtraOptions="-defer 0"
    AgentExtraOptions="-defer 0"
 
 
 
    /etc/nxserver/node.conf
 
    AGENT_EXTRA_OPTIONS_X="-defer 0"
 
 
 
If this doesn't work try setting the Link Type to "LAN". This may be slower, but may also work.
 
  
 
Finally, try using "adxv -nopixmap"  
 
Finally, try using "adxv -nopixmap"  
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== Visualizing XDS data reduction ==
 
== Visualizing XDS data reduction ==
  
The latest beta versions of ADXV (from https://www.scripps.edu/tainer/arvai/adxv.html/) can read spot files (whose name ends with .adx) and display them together with the frames.
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ADXV can read spot files (whose name ends with .adx) and display them together with the frames.
  
 
These spot files can be written by [[generate_adx]]. In adxv's file selection window, it is useful to change the filename pattern from e.g. "*.cbf" to just "*" which then gives you the possibility to load frames and spot files at will.
 
These spot files can be written by [[generate_adx]]. In adxv's file selection window, it is useful to change the filename pattern from e.g. "*.cbf" to just "*" which then gives you the possibility to load frames and spot files at will.
  
 
If using ADXV on a NoMachine (NX) desktop, it is useful to know that one needs the -nopixmap commandline option if the frame is not correctly displayed (I found that the zoom window still does not display correctly).
 
If using ADXV on a NoMachine (NX) desktop, it is useful to know that one needs the -nopixmap commandline option if the frame is not correctly displayed (I found that the zoom window still does not display correctly).

Revision as of 16:41, 19 March 2021

The ADXV program can be downloaded from http://www.scripps.edu/tainer/arvai/adxv.html


What if the Image Window doesn't refresh correctly under x2go ?

https://wiki.x2go.org/doku.php X2go is based on an old version of the NoMachine NX libraries. These had a bug which must be worked around.

You may have try adding an option to /etc/x2go/x2goagent.options ; earlier versions of the NX software required the following addition to /usr/NX/etc/node.cfg :

AgentExtraOptions="-defer 0"

Finally, try using "adxv -nopixmap"

Visualizing XDS data reduction

ADXV can read spot files (whose name ends with .adx) and display them together with the frames.

These spot files can be written by generate_adx. In adxv's file selection window, it is useful to change the filename pattern from e.g. "*.cbf" to just "*" which then gives you the possibility to load frames and spot files at will.

If using ADXV on a NoMachine (NX) desktop, it is useful to know that one needs the -nopixmap commandline option if the frame is not correctly displayed (I found that the zoom window still does not display correctly).