|
|
| Line 5: |
Line 5: |
| This converts all .img files in ../images to miniCBF files with the extension .img.cbf in the current directory. | | This converts all .img files in ../images to miniCBF files with the extension .img.cbf in the current directory. |
|
| |
|
| For 2cbf to work with the [http://xds.mpimf-heidelberg.mpg.de/html_doc/xds_parameters.html#LIB= LIB=] option, it is mandatory to have a filename like test_123456.xy, i.e. with a 6-digit number and a 2-letter extension. If you want to use LIB= and your filenames do not follow this pattern, just symlink them, and construct the symlinks accordingly: e.g.
| | To have control over the number of digits encoding the frame number, one can use bash's printf command. Example: |
| <pre> | | <pre> |
| #!/bin/bash | | #!/bin/bash |
| # purpose: create symlinks for xds_par
| |
| # usage: mklinks
| |
|
| |
| for j in $(seq 1 120); do | | for j in $(seq 1 120); do |
| ln -sfn Data_02_$(printf "%04d" "$j").sfrm Data_02_$(printf "%06d" "$j").sf | | echo Data_02_$(printf "%04d" "$j").sfrm |
| done | | done |
|
| |
| echo ready
| |
| </pre> | | </pre> |
|
| |
|
| If you don't do this, you'll get an error message like
| | To convert frames stored in Dectris-format .h5 files, one should replace "master" with a 6-digit framenumber, and use the [https://xds.mr.mpg.de/html_doc/xds_parameters.html#LIB= LIB=] keyword: |
| <pre>
| | echo collect_01_000001.h5 collect_1.cbf LIB=/usr/local/lib64/dectris-neggia.so | 2cbf |
| forrtl: severe (59): list-directed I/O syntax error, unit -5, file Internal List-Directed Read
| |
| Image PC Routine Line Source
| |
| 2cbf 000000000041DCDC Unknown Unknown Unknown
| |
| 2cbf 00000000004476AA Unknown Unknown Unknown
| |
| 2cbf 0000000000445C2B Unknown Unknown Unknown
| |
| 2cbf 00000000004059B8 getfrm_ 1713 MAIN_2CBF.f90
| |
| 2cbf 0000000000404C6A MAIN__ 58 MAIN_2CBF.f90
| |
| 2cbf 0000000000402ADE Unknown Unknown Unknown
| |
| libc-2.17.so 00007FB47339BB35 __libc_start_main Unknown Unknown
| |
| 2cbf 00000000004029E9 Unknown Unknown Unknown | |
| </pre>
| |