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Furthermore, you want the [https://www.dectris.com/company/news/newsroom/news-details/process-eiger-data-with-xds-fast Neggia] library (does not work for HDF5 data from DLS) or the [https://github.com/DiamondLightSource/durin Durin plugin]. These may be installed through the <code>get_folder.sh</code> script, in <code>/usr/local/lib64</code>.
Furthermore, you want the [https://www.dectris.com/company/news/newsroom/news-details/process-eiger-data-with-xds-fast Neggia] library (does not work for HDF5 data from DLS) or the [https://github.com/DiamondLightSource/durin Durin plugin]. These may be installed through the <code>get_folder.sh</code> script, in <code>/usr/local/lib64</code>.
== Mac OSX ==
== macOS ==
=== [[XDS]] package ===
=== [[XDS]] package ===
If you are an academic user,
If you are an academic user,
==== Intel processor ====
echo you may have to "sudo su" first, to obtain administrator permissions!
echo you may have to "sudo su" first, to obtain administrator permissions!
if you get a security error popup (google "xattr com.apple.quarantine catalina").
if you get a security error popup (google "xattr com.apple.quarantine catalina").
==== Apple M1 processor ====
echo you may have to "sudo su" first, to obtain administrator permissions!
echo you may have to "sudo su" first, to obtain administrator permissions!
curl -L -o - https://xds.mr.mpg.de/XDS-Apple_M1.tar.gz | tar xzvf -
curl -L -o - https://xds.mr.mpg.de/XDS-Apple_M1.tar.gz | tar xzvf -
ln -sf XDS-Apple_M1/* .
ln -sf XDS-Apple_M1/* .
If you want to process .h5 files written by Dectris' detectors, use the [https://strucbio.biologie.uni-konstanz.de/pub/mac_bin/dectris-neggia-Apple-arm64.so Neggia plugin for Apple ARM64 processors]. I could not successfully compile the Durin plugin for data from DLS, see https://github.com/DiamondLightSource/durin/issues/24 .
=== Prerequisites (Xcode, CCP4) for [[generate_XDS.INP]], [[XDSGUI]] and other programs ===
=== Prerequisites (Xcode, CCP4) for [[generate_XDS.INP]], [[XDSGUI]] and other programs ===
-rw-r--r-- 1 kay staff 107 7 Mär 09:41 .zprofile
-rw-r--r-- 1 kay staff 107 7 Mär 09:41 .zprofile
kay@Kays-MacBook-Air-2018 ~ % cat .zprofile
kay@Kays-MacBook-Air-2018 ~ % cat .zprofile
source /Users/kay/.profile
source $HOME/.profile
# Added by CCP4 package manager:
# Added by CCP4 package manager:
. '/Applications/ccp4-7.1/bin/ccp4.setup-sh'
. '/Applications/ccp4-7.1/bin/ccp4.setup-sh'
In order to enable [[Eiger]] data processing, the <code>get_folder.sh</code> script
In order to enable [[Eiger]] data processing, the <code>get_folder.sh</code> script
# copies Dectris' Neggia library and DLS's Durin library into <code>/usr/local/lib64</code>
# copies Dectris' Neggia library and DLS's Durin library into <code>/usr/local/lib64</code> (see above for Neggia and Durin on M1 Macs; the script does not yet handle this automatically)
# copies [https://www.globalphasing.com GlobalPhasing's] <code>hdf2mini-cbf</code> into <code>/usr/local/bin</code>, but under the name <code>H5ToXds</code> (consider getting a [https://www.globalphasing.com/autoproc/ autoPROC] license!)
# copies [https://www.globalphasing.com GlobalPhasing's] <code>hdf2mini-cbf</code> into <code>/usr/local/bin</code>, but under the name <code>H5ToXds</code> (consider getting a [https://www.globalphasing.com/autoproc/ autoPROC] license!)
# copies <code>h5dump</code> [https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.12/hdf5-1.12.1/bin/unix/hdf5-1.12.1-Std-macos11_64-clang.tar.gz] into <code>/usr/local/bin</code>
# copies <code>h5dump</code> [https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.12/hdf5-1.12.1/bin/unix/hdf5-1.12.1-Std-macos11_64-clang.tar.gz] into <code>/usr/local/bin</code>
