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2cbf: Difference between revisions
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convert many frames
m (add hint to the fact that .h5 files can be read without LIB=) |
(convert many frames) |
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| Line 17: | Line 17: | ||
echo collect_01_000001.h5 collect_1.cbf LIB=/usr/local/lib64/dectris-neggia.so | 2cbf | echo collect_01_000001.h5 collect_1.cbf LIB=/usr/local/lib64/dectris-neggia.so | 2cbf | ||
It should work without LIB=, but then H5ToXds is required. | It should work without LIB=, but then H5ToXds is required. | ||
To convert a full data set, use e.g.: | |||
#!/bin/bash | |||
for j in $(seq 1 100); do | |||
echo x1_1_$(printf "%06d" "$j").h5 x1_1_$(printf "%04d" "$j").cbf LIB=/usr/local/bin/linux_bin/dectris-neggia.so | 2cbf | |||
done | |||
or just use GlobalPhasing's hdf2mini-cbf : | |||
hdf2mini-cbf x1_1_master.h5 -linkrange 1 100 | |||
which seems to convert batches of 100 frames - don't know how to restrict it to convert only frames 1 to 100. The advantage of hdf2mini-cbf is that it writes a proper mini-CBF header which is suitable for MOSFLM or DIALS. | |||