Cookies help us deliver our services. By using our services, you agree to our use of cookies. More information

Changes

From XDSwiki

Main Page

758 bytes added, 27 June
See also
XDS is a program package written for the "reduction" of 2-dimensional data images ("frames") obtained from crystals irradiated with monochromatic X-rays. The package mainly consists of the programs [[XDS]] (which processes a single dataset), [[XSCALE]] (for scaling of several datasets) , and [[XDSCONV]] (for conversion of a reflection output file to other formats). Additional auxiliary programs are [[cellparm]], [[2cbf]] and [[merge2cbf]]. [[XDS-viewer]], for visualizing frames, can be downloaded separately (see [[Installation]]).
The author of the program package is Wolfgang Kabsch (Wolfgang dot Kabsch at mpimf-heidelberg dot mpg dot de); since 2007 I contribute code, handle and fix bugs and teach XDS usage.
The program is free for academic use, and can be downloaded from http://wwwxds.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/downloading.html (if the download from that site fails, there's a copy at ftphttps://turn5.biologie.uni-konstanz.de{{SERVERNAME}}/xds ).
Documentation is at http://wwwxds.mpimf-heidelberg.mpg.de/~kabschhtml_doc/xds XDS.html or [http://strucbio.biologie.uni-konstanz.de/~dikay/XDS_html_doc/index.html here].
Since version 30-Jan-2009, the format of the control images written by [[XDS]] (and [[XSCALE]]) [http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/Release_Notes.html changed]. An open-source viewer [[XDS-Viewer]] is [http://xds-viewer.sourceforge.net available]for visualization of the control images written by [[XDS]] (and [[XSCALE]]). Latest versions of [[Adxv]] can also visualize XDS output files.
There is another program available, which serves to produce additional output of tables and plots. This is not part of the official XDS package; its name is [[XDSSTAT]] (written and distributed by Kay Diederichs). Yet another program that produces frame-wise (for XDS_ASCII.HKL) or dataset-wise (for XSCALE.HKL) CC<sub>1/2</sub> statistics is [[XDSCC12]].
[[XDSGUI]], a graphical user interface, serves to help using XDS.
== News ==
[https://www.youtube.com/watch?v=3WU9NrILECo XDS and XDSGUI. SBGrid Webinar by Kay Diederichs, May 2020] [xds_nonisomorphismhttps://strucbio.biologie.uni-konstanz.de/pub/Crystallographic_data_processing_with_XDS_using_XDSGUI.pdf slides of the talk] [[xdscc12]]
[[xscale_isocluster]]
 
Our [https://doi.org/10.1107/S2059798320006348 July 2020 paper] about selection and scaling in multi-data-set crystallography
== See also ==
[ftphttps://turn5{{SERVERNAME}}/pub/MWhitley_CSHL-2018_XDS-Tutorial.biologiepdf Matthew J.uniWhitley's excellent tutorial] about XDS processing with [[XDSGUI]], from the 2018 Cold Spring Harbor X-konstanzRay Methods in Structural Biology Course.de [https://{{SERVERNAME}}/pub/XDS_Yamashita_ACA2014.pdf Keitaro Yamashita's talk ] about XDS processing given at ACA2014. [http://strucbio.biologie.uni-konstanz.de/~dikay/XDS_Diederichs_ACA2011.pdf XDS talk]given at ACA2011.
[httphttps://strucbiowww.biologieresearchgate.uni-konstanz.denet/~dikaypublication/XDS_Diederichs_ACA2011236032099_Practical_use_of_XDS_%28for_data_reduction%29._Presented_in_April_4th_2013_Dept.pdf _of_Biochemical_Sciences_Sapienza_University_of_Rome?ev=prf_pub Practical use of XDS talk given at ACA2011(for data reduction) - by Fulvio Saccoccia], Presented in April, 4th 2013; Dept. of Biochemical Sciences and Istituto Pasteur-Fondazione Cenci Bolognetti - Sapienza University of Rome.
[https://www.researchgate.net/publication/236032099_Practical_use_of_XDS_%28for_data_reduction%29._Presented_in_April_4th_2013_Dept._of_Biochemical_Sciences_Sapienza_University_of_Rome?ev=prf_pub Practical use of XDS ([XDSGUI]], a graphical user interface for data reduction) - processing with XDS developed by Fulvio Saccoccia, Presented in April, 4th 2013; Dept. of Biochemical Sciences Wolfgang Brehm and Istituto Pasteur-Fondazione Cenci Bolognetti - Sapienza University of Rome. ]Kay Diederichs
[http://www.helmholtz-berlin.de/forschung/oe/funkma/soft-matter/forschung/bessy-mx/xdsapp/index_en.html XDSAPP], a graphical user interface for automatic data processing with XDS]
[[Installation]]
2,261
edits

Navigation menu