Cookies help us deliver our services. By using our services, you agree to our use of cookies. More information

Changes

From XDSwiki

Xds nonisomorphism

73 bytes added, 13:20, 22 March 2018
fix links
[ftp://turn5.biologie.uni-konstanz.de/pub/linux_bin/xds_nonisomorphismxds_nonisomorphism][ftp://turn5.rhel6biologie.bz2 uni-konstanz.de/pub/sources/xds_nonisomorphism.f90] is a program that clusters datasets as stored in their unmerged reflection file (typically called XDS_ASCII.HKL) as written by [[XDS]]. It implements the method of [https://doi.org/10.1107/S1399004713025431 Brehm and Diederichs (2014)] and theory of [https://doi.org/10.1107/S2059798317000699 Diederichs (2017)].
This program determines the lengths of the vectors from the [[CC1/2]] of the data sets, and the angles between vectors from the correlation coefficients between data sets. It requires data sets with internal multiplicity, and mutual overlap. Angles are expressed in degrees. Less than 10° should be considered good isomorphism, 90° means completely unrelated (i.e. non-isomorphous) datasets (theoretically, higher angles are also possible if data sets are anti-correlated). After the analysis, it produces a 3D representation of the arrangement of data sets such that the distances in 3D try to reproduce the angles - please note that this is a completely different representation from that of [[xscale_isocluster]]! xds_nonisomorphism prints a short help text if the -h option is used.
2,337
edits

Navigation menu