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| # revision 0.67 . KD 02/10/2016 add BM30A (ADSC SERIAL 924) reverse_phi | | # revision 0.67 . KD 02/10/2016 add BM30A (ADSC SERIAL 924) reverse_phi |
| # revision 0.68 . KD 24/10/2016 add -H option (follow symlinks) to "find" command (thanks to Jan Gebauer!) | | # revision 0.68 . KD 24/10/2016 add -H option (follow symlinks) to "find" command (thanks to Jan Gebauer!) |
− | REVISION="0.68 (24-Oct-2016)" | + | # revision 0.69 . KD 04/11/2016 add CMOS-1 MBC Detector at ALS 4.2.2 |
| + | REVISION="0.69 (04-Nov-2016)" |
| + | |
| # | | # |
| # usage: e.g. generate_XDS.INP "/file/system/frms/mydata_1_???.img" | | # usage: e.g. generate_XDS.INP "/file/system/frms/mydata_1_???.img" |
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| grep -q BEAM_CENTER_X tmp2 && DET=adsc | | grep -q BEAM_CENTER_X tmp2 && DET=adsc |
| grep -q mar345 tmp2 && DET=MAR345 | | grep -q mar345 tmp2 && DET=MAR345 |
− | grep -q BRUKER tmp2 && grep -q CBF tmp2 && DET=Bruker-cbf | + | grep -q BRUKER tmp2 && grep -q CBF tmp2 && DET=Bruker-cbf |
| + | grep -q CMOS1 tmp2 && DET=adsc-CMOS1 |
| else | | else |
| h5dump -d "/entry/instrument/detector/description" $FIRSTFRAME | grep -i Eiger > /dev/null && DET=eiger | | h5dump -d "/entry/instrument/detector/description" $FIRSTFRAME | grep -i Eiger > /dev/null && DET=eiger |
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| # find NX, QX, ORGX and ORGY: | | # find NX, QX, ORGX and ORGY: |
| NX=`grep SIZE1 tmp2 | tail -1 | sed s/SIZE1=//` | | NX=`grep SIZE1 tmp2 | tail -1 | sed s/SIZE1=//` |
| + | NY=`grep SIZE2 tmp2 | tail -1 | sed s/SIZE2=//` |
| QX=`grep PIXEL_SIZE tmp2 | sed s/PIXEL_SIZE=//` | | QX=`grep PIXEL_SIZE tmp2 | sed s/PIXEL_SIZE=//` |
− | # FIXME - next 2 lines should be done properly, from header
| |
− | NY=$NX
| |
| QY=$QX | | QY=$QX |
| BEAM_CENTER_X=`grep BEAM_CENTER_X tmp2 | sed s/BEAM_CENTER_X=//` | | BEAM_CENTER_X=`grep BEAM_CENTER_X tmp2 | sed s/BEAM_CENTER_X=//` |
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| # find DETECTOR_DISTANCE and OSCILLATION_RANGE: | | # find DETECTOR_DISTANCE and OSCILLATION_RANGE: |
| DETECTOR_DISTANCE=`grep ^DISTANCE tmp2 | sed s/DISTANCE=//` | | DETECTOR_DISTANCE=`grep ^DISTANCE tmp2 | sed s/DISTANCE=//` |
− | OSCILLATION_RANGE=`grep OSC_RANGE tmp2 | sed s/OSC_RANGE=//` | + | OSCILLATION_RANGE=`grep OSC_RANGE tmp2 | sed s/OSC_RANGE=//` |
| + | |
| + | elif [ "$DET" == "adsc-CMOS1" ]; then |
| + | DETECTOR="ADSC MINIMUM_VALID_PIXEL_VALUE= 1 OVERLOAD= 65000" |
| + | echo Data from CMOS1 MBC detector. |
| + | SENSOR_THICKNESS=0.01 |
| + | sed s/\;// tmp2 > tmp1 |
| + | mv tmp1 tmp2 |
| + | X_RAY_WAVELENGTH=`grep WAVELENGTH tmp2 | head -1 | sed s/WAVELENGTH=//` |
| + | NX=`grep SIZE1 tmp2 | tail -1 | sed s/SIZE1=//` |
| + | QX=`grep PIXEL_SIZE tmp2 | sed s/PIXEL_SIZE=//` |
| + | NY=`grep SIZE2 tmp2 | tail -1 | sed s/SIZE2=//` |
| + | QY=$QX |
| + | ORGX=`grep BEAM_CENTER_X tmp2 | sed s/BEAM_CENTER_X=//` |
| + | ORGY=`grep BEAM_CENTER_Y tmp2 | sed s/BEAM_CENTER_Y=//` |
| + | REVERSE_PHI="yes" |
| + | DETECTOR_DISTANCE=`grep ^DISTANCE tmp2 | sed s/DISTANCE=/-/` |
| + | OSCILLATION_RANGE=`grep OMEGA_DELTA tmp2 | sed s/OMEGA_DELTA=//` |
| + | DIRECTION_OF_DETECTOR_X_AXIS="-1 0 0" |
| | | |
| elif [ "$DET" == "pilatus" ]; then | | elif [ "$DET" == "pilatus" ]; then |
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| if [ "$DET" == "Bruker-cbf" ]; then | | if [ "$DET" == "Bruker-cbf" ]; then |
| echo "DELPHI=15 ! refine less often than the default of 5" >> XDS.INP | | echo "DELPHI=15 ! refine less often than the default of 5" >> XDS.INP |
| + | elif [ "$DET" == "adsc-CMOS1" ]; then |
| + | echo UNTRUSTED_RECTANGLE= 0 1468 2451 2631 >> XDS.INP |
| elif [ "$DET" == "pilatus" -o "$DET" == "eiger" ]; then | | elif [ "$DET" == "pilatus" -o "$DET" == "eiger" ]; then |
| cat >> XDS.INP << eof | | cat >> XDS.INP << eof |