Installation: Difference between revisions

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Installation (view source)

Revision as of 20:01, 10 February 2016

1,626 bytes removed ,  10 February 2016
remove Linux-32bit chapter
(remove Linux-32bit chapter)
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Alternatively, tkdiff may be installed, or other graphical comparison programs, like meld or kdiff3.
Alternatively, tkdiff may be installed, or other graphical comparison programs, like meld or kdiff3.
== Linux 32 bit ==
Log in as root - we need write permission for /usr/local/bin .
To get the [[XDS]] package,
<pre>
wget -O - ftp://ftp.mpimf-heidelberg.mpg.de/pub/kabsch/XDS-IA32_Linux_x86.tar.gz | tar xzvf -
ln -sf XDS-IA32_Linux_x86/* .
</pre>
To get the script [[generate_XDS.INP]] from its XDSwiki article,
<pre>
cd /usr/local/bin
wget http://strucbio.biologie.uni-konstanz.de/xdswiki/index.php/generate_XDS.INP -O - | \
  sed -e s/\&nbsp\;/\ /g -e s/\&gt\;/\>/g -e s/\&lt\;/\</g -e s/amp\;//g -e s/\&quot\;/\"/g -e s/\&\#\1\6\0\;/\ /g | \
  sed '/# end of generate_XDS.INP/,$d' | awk '/^#/,/rm -f tmp1 tmp2/' > generate_XDS.INP
chmod +x generate_XDS.INP
</pre>
To get [[XDS-Viewer]],
<pre>
wget ftp://turn5.biologie.uni-konstanz.de/pub/xds-viewer-0.6 -O xds-viewer
ln -sf xds-viewer xdsviewer
</pre>
To get [[XDSSTAT]],
<pre>
wget ftp://turn5.biologie.uni-konstanz.de/pub/xdsstat-linux32.bz2 -O xdsstat.bz2
bunzip2 -f xdsstat.bz2
chmod a+x xdsstat
</pre>
To get [[XDSGUI]],
<pre>
cd /usr/local/bin
wget ftp://turn5.biologie.uni-konstanz.de/pub/xdsgui.rhel6.32 -O xdsgui
chmod a+x xdsgui
</pre>
If this binary does not work for you: there is also a statically linked binary called xdsgui.rhel5.32 . Ubuntu 14 users: please read http://strucbio.biologie.uni-konstanz.de/xdswiki/index.php/XDSGUI#Installation if you have a problem with missing libmng2.
It is useful to install xxdiff . The package is likely available for your distribution - google for it, or try e.g.
yum -y install xxdiff
on RedHat systems, or
apt-get install xxdiff
on Ubuntu.
Alternatively, tkdiff may be used, or kdiff3, or meld.


== Mac (Intel) ==
== Mac (Intel) ==
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Bureaucrats
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