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== What is XDS, and how to obtain it? ==
 
== What is XDS, and how to obtain it? ==
XDS is a program package written for the "reduction" of 2-dimensional data images ("frames") obtained from crystals irradiated with monochromatic X-rays. The package mainly consists of the programs [[XDS]] (which processes a single dataset), [[XSCALE]] (for scaling of several datasets) , [[XDSCONV]] (for conversion of output file to other formats) and [[VIEW]] (for visualizing).
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XDS is a program package written for the "reduction" of 2-dimensional data images ("frames") obtained from crystals irradiated with monochromatic X-rays. The package mainly consists of the programs [[XDS]] (which processes a single dataset), [[XSCALE]] (for scaling of several datasets) , and [[XDSCONV]] (for conversion of a reflection output file to other formats). Additional auxiliary programs are [[cellparm]], [[2cbf]] and [[merge2cbf]]. [[XDS-viewer]], for visualizing frames, can be downloaded separately (see [[Installation]]).
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The author of the program package is Wolfgang Kabsch (Wolfgang dot Kabsch at mpimf-heidelberg dot mpg dot de).  
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The author of the program package is Wolfgang Kabsch (Wolfgang dot Kabsch at mpimf-heidelberg dot mpg dot de); since 2007 I contribute code, handle and fix bugs and teach XDS usage.  
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The program is free for academic use, and can be downloaded from http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/downloading.html (if the download from that site fails, there's a copy at ftp://turn5.biologie.uni-konstanz.de/xds ).
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The program is free for academic use, and can be downloaded from http://xds.mpimf-heidelberg.mpg.de/html_doc/downloading.html (if the download from that site fails, there's a copy at ftp://turn5.biologie.uni-konstanz.de/xds ).
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Documentation is at http://www.mpimf-heidelberg.mpg.de/~kabsch/xds or [http://strucbio.biologie.uni-konstanz.de/~dikay/XDS_html_doc/index.html here].
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Documentation is at http://xds.mpimf-heidelberg.mpg.de/html_doc/XDS.html or [http://strucbio.biologie.uni-konstanz.de/~dikay/XDS_html_doc/index.html here].
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Since version 30-Jan-2009, the format of the control images written by [[XDS]] (and [[XSCALE]]) [http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/Release_Notes.html changed]. An open-source viewer [[XDS-Viewer]] is [http://xds-viewer.sourceforge.net available]. Latest versions of [[Adxv]] can also visualize XDS output files.
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An open-source viewer [[XDS-Viewer]] is [http://xds-viewer.sourceforge.net available] for visualization of the control images written by [[XDS]] (and [[XSCALE]]). Latest versions of [[Adxv]] can also visualize XDS output files.
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There is another program available, which serves to produce additional output of tables and plots. This is not part of the official XDS package; its name is [[XDSSTAT]] (written and distributed by Kay Diederichs).
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There is another program available, which serves to produce additional output of tables and plots. This is not part of the official XDS package; its name is [[XDSSTAT]] (written and distributed by Kay Diederichs). Yet another program that produces frame-wise (for XDS_ASCII.HKL) or dataset-wise (for XSCALE.HKL) CC<sub>1/2</sub> statistics is [[XDSCC12]].
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[[XDSGUI]], a graphical user interface, serves to help using XDS.
    
== Links to XDS papers by Wolfgang Kabsch ==
 
== Links to XDS papers by Wolfgang Kabsch ==
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== Contributing to the Wiki ==
 
== Contributing to the Wiki ==
* The MediaWiki software used here works in the same way as the well-known Wikipedia. This means that anyone can read articles, but for editing existing pages, and creating new ones (this happens automatically when you click on a [[red link]]), you need a [[Creating an account|userid and password]]. Due to the amount of spam created by abuse of Google mail accounts, we are no longer allowing account creation for @gmail.com email addresses.  
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* The MediaWiki software used here works in the same way as the well-known Wikipedia. This means that anyone can read articles, but for editing existing pages, and creating new ones (this happens automatically when you click on a [[red link]]), you need a [[Creating an account|userid and password]].
 
* Short introduction to [[creating an article]]
 
* Short introduction to [[creating an article]]
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* [[Topics]] as an attempt to provide a hierarchy of pages
 
* [[Topics]] as an attempt to provide a hierarchy of pages
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* new articles: [[adxv]], [[SIM_MX]], [[FAQ]], [[Problems]], [[CORRECT]]
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* new articles: [[SSX]], [[Xscale_isocluster]], [[LIB]]
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== News ==
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[[xds_nonisomorphism]]
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[[xscale_isocluster]]
    
== See also ==
 
== See also ==
[http://smb.slac.stanford.edu/facilities/software/xds/ A Quick XDS Tutorial for SSRL]
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[ftp://turn5.biologie.uni-konstanz.de/pub/XDS_Yamashita_ACA2014.pdf Keitaro Yamashita's talk about XDS processing given at ACA2014].
    
[http://strucbio.biologie.uni-konstanz.de/~dikay/XDS_Diederichs_ACA2011.pdf XDS talk given at ACA2011]
 
[http://strucbio.biologie.uni-konstanz.de/~dikay/XDS_Diederichs_ACA2011.pdf XDS talk given at ACA2011]
    
[https://www.researchgate.net/publication/236032099_Practical_use_of_XDS_%28for_data_reduction%29._Presented_in_April_4th_2013_Dept._of_Biochemical_Sciences_Sapienza_University_of_Rome?ev=prf_pub Practical use of XDS (for data reduction) - by Fulvio Saccoccia, Presented in April, 4th 2013; Dept. of Biochemical Sciences and Istituto Pasteur-Fondazione Cenci Bolognetti - Sapienza University of Rome.  ]
 
[https://www.researchgate.net/publication/236032099_Practical_use_of_XDS_%28for_data_reduction%29._Presented_in_April_4th_2013_Dept._of_Biochemical_Sciences_Sapienza_University_of_Rome?ev=prf_pub Practical use of XDS (for data reduction) - by Fulvio Saccoccia, Presented in April, 4th 2013; Dept. of Biochemical Sciences and Istituto Pasteur-Fondazione Cenci Bolognetti - Sapienza University of Rome.  ]
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[http://www.helmholtz-berlin.de/forschung/oe/funkma/soft-matter/forschung/bessy-mx/xdsapp/index_en.html XDSAPP, a graphical user interface for automatic data processing with XDS]
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[[Installation]]
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