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| − | '''All existing articles and links are blue, whereas a red link corresponds to an article that does not yet exist - by clicking on the red link you start creating that article!''' | + | '''This page is now obsolete since it was creating before too much of hierarchy structure. Use the Navigation Panel in the Side Bar instead.''' |
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| − | == Expression and Purification ==
| + | --[[User:3ND03P|3ND03P]] 09:40, 5 March 2008 (CET) |
| − | * [[SLIC cloning]]
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| − | * [[Tags]]
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| − | * [[Expression systems]]
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| − | * [[Expression screening]]
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| − | * [[Purification]]
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| − | * [[Cleavage: wanted and unwanted]]
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| − | * [[DNA and DNA-binding proteins]]
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| − | * [[Expression and Purification: Tips and Tricks]]
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| − | | |
| − | == Crystals ==
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| − | === Crystal growth and manipulation ===
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| − | * [[Modifying the protein to crystallize better]]
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| − | * [[Crystallization screens and methods]]
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| − | * [[Robots for crystallization setup]]
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| − | * [[Biophysical methods]] for characterizing proteins and their crystals
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| − | * [[Visualization of crystal growth]]
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| − | * [[Robots for crystal mounting]]
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| − | * [[Crystal growth: Tips and Tricks]]
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| − | | |
| − | === Data collection ===
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| − | * [[X-ray generators and detectors]] (experiences)
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| − | * [[Synchrotron beamlines]]
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| − | * [[Cryo]]
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| − | * [[Strategies]]
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| − | * [[Data quality]]
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| − | * [[Radiation damage]]
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| − | * [[Data collection: Tips and Tricks]]
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| − | | |
| − | == Crystallography ==
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| − | === Theory ===
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| − | * [[Basics of Crystallography]]
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| − | * [[Phase problem]], and [[Phasing]]
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| − | * [[Twinning]]
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| − | * [[R-factors]]
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| − | * [[References and links]]
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| − | | |
| − | === Programs ===
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| − | ==== by package ====
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| − | (large packages first)
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| − | * [[CCP4]]
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| − | * [[CNS]]
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| − | * [[PHENIX]]
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| − | * [[SHELX C/D/E/L]] (homepage at [http://shelx.uni-ac.gwdg.de/SHELX])
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| − | * moleman, lsqman, ... from [http://xray.bmc.uu.se/usf/ Uppsala Software Factory]
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| − | * XDS [http://www.mpimf-heidelberg.mpg.de/~kabsch/xds homepage] and [http://strucbio.biologie.uni-konstanz.de/xdswiki/index.php/XDS XDSwiki]
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| − | * HKL [http://www.hkl-xray.com homepage]
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| − | * [[COOT]]
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| − | * [http://www.pymolwiki.org/index.php/Main_Page PyMol] wiki
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| − | * [[O]]
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| − | * [[ARP/wARP]]
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| − | * [[SHARP]] [http://www.globalphasing.com homepage]
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| − | * [http://www.solve.lanl.gov/index.html Solve/Resolve]
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| − | * ...
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| − | | |
| − | ==== by task ====
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| − | * [[Data reduction]]
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| − | * [[Molecular replacement]] (MR)
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| − | * [[Experimental phasing (SIR/MIR and SAD/MAD)]]
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| − | * [[Model building]]
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| − | * [[Refinement]]
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| − | * [[Model validation]]
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| − | * [[Solving a structure: Tips and Tricks]]
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| − | * [[Model building and refinement: Tricks and Tips]]
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| − | | |
| − | == Bioinformatics ==
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| − | * [[Servers and programs for sequence analysis]]
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| − | * [[Structure based sequence alignment]]
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| − | * [[Servers for structure analysis|Servers and programs for protein structure analysis]]
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| − | * [[Programs for nucleic acid structure analysis|Programs for nucleic acid structure analysis]]
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| − | * [[Servers for ligand topologies/parameters]]
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| − | * [[Prediction of structure from sequence: servers and programs]]
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| − | * [[Programs for visualization]] (see also [[Model building]])
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| − | * [[Links to Bioinformatics websites]]
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| − | | |
| − | == Hardware: computing and displaying ==
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| − | * [[Computer hardware]]
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| − | * [[Operating systems and Linux distributions]]
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| − | * [[Programming and programming languages]]
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| − | * [[Visualization: graphics cards and 3D|Graphics cards and 3D]]
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| − | | |
| − | == FAQ and troubleshooting ==
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| − | * [[Expression and Purification: Tips and Tricks|protein is not expressed or cannot be purified]]
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| − | * [[Crystal growth: Tips and Tricks|crystals don't grow]]
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| − | * [[Solving a structure: Tips and Tricks|phases too bad]]
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| − | * [[Model building and refinement: Tricks and Tips|model does not refine]]
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| − | | |
| − | == See also ==
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| − | * [[Teaching crystallography]]
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| − | * [[Other crystallography links, or collections of links]]
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| − | * [[Other crystallography wikis]]
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