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=== Data collection === | === Data collection === | ||
* [[Synchrotron beamlines]] | |||
* [[Cryo]] | |||
* [[Strategies]] | * [[Strategies]] | ||
* [[Data quality]] | * [[Data quality]] | ||
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=== Theory === | === Theory === | ||
* [[Basics of Crystallography]] | * [[Basics of Crystallography]] | ||
* [[Phase problem]], and [[Phasing]] | |||
* [[R-factors]] | * [[R-factors]] | ||
* [[ | * [[References and links]] | ||
=== Programs === | === Programs === | ||
==== by package (large packages first) | ==== by package ==== | ||
(large packages first) | |||
* [[CCP4]] | * [[CCP4]] | ||
* [[CNS]] | * [[CNS]] | ||
* [[PHENIX]] | * [[PHENIX]] | ||
* [[SHELX C/D/E/L]] (homepage at [http://shelx.uni-ac.gwdg.de/SHELX]) | * [[SHELX C/D/E/L]] (homepage at [http://shelx.uni-ac.gwdg.de/SHELX]) | ||
* moleman, lsqman, | * moleman, lsqman, ... from [http://xray.bmc.uu.se/usf/ Uppsala Software Factory] | ||
* XDS [http://www.mpimf-heidelberg.mpg.de/~kabsch/xds homepage] and [http://strucbio.biologie.uni-konstanz.de/xdswiki/index.php/XDS XDSwiki] | * XDS [http://www.mpimf-heidelberg.mpg.de/~kabsch/xds homepage] and [http://strucbio.biologie.uni-konstanz.de/xdswiki/index.php/XDS XDSwiki] | ||
* HKL [http://www.hkl-xray.com homepage] | * HKL [http://www.hkl-xray.com homepage] | ||
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* [[Molecular replacement (MR)]] | * [[Molecular replacement (MR)]] | ||
* [[Experimental phasing (SIR/MIR and SAD/MAD)]] | * [[Experimental phasing (SIR/MIR and SAD/MAD)]] | ||
* [[Model building and validation]] | |||
* [[Refinement]] | * [[Refinement]] | ||
=== Hardware: computing and sychrotrons === | |||
== Bioinformatics and computers == | == Bioinformatics and computers == | ||
* [[Servers and programs for sequence analysis (e.g. alignment)]] | * [[Servers and programs for sequence analysis (e.g. alignment)]] | ||
* [[Servers and programs for structure analysis]] | * [[Servers and programs for protein structure analysis]] | ||
* [[Servers for ligand topologies/parameters]] | |||
* [[Prediction of structure from sequence: servers and programs]] | * [[Prediction of structure from sequence: servers and programs]] | ||
* [[Visualization: programs, graphics cards and 3D]] | * [[Visualization: programs, graphics cards and 3D]] | ||
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* [[Operating systems and Linux distributions]] | * [[Operating systems and Linux distributions]] | ||
== FAQ == | |||
== FAQ and troubleshooting == | |||
* [[Protein expression|protein is not expressed]] | |||
* [[Crystal growth: Tips and Tricks|crystals don't grow]] | |||
* [[Model building and validation|phases too bad]] | |||
* [[Refinement|model does not refine]] | |||
Revision as of 13:55, 8 February 2008
Expression and Purification
- Expression systems
- Purification
- Cleavage: wanted and unwanted
- DNA and DNA-binding proteins
- Expression and Purification: Tips and Tricks
Crystals
Crystal growth and manipulation
- Crystallization screens and methods
- Robots for crystallization setup
- Visualization of crystal growth
- Robots for crystal mounting
- Crystal growth: Tips and Tricks
Data collection
Crystallography
Theory
Programs
by package
(large packages first)
- CCP4
- CNS
- PHENIX
- SHELX C/D/E/L (homepage at [1])
- moleman, lsqman, ... from Uppsala Software Factory
- XDS homepage and XDSwiki
- HKL homepage
- ...
by task
- Data reduction
- Molecular replacement (MR)
- Experimental phasing (SIR/MIR and SAD/MAD)
- Model building and validation
- Refinement
Hardware: computing and sychrotrons
Bioinformatics and computers
- Servers and programs for sequence analysis (e.g. alignment)
- Servers and programs for protein structure analysis
- Servers for ligand topologies/parameters
- Prediction of structure from sequence: servers and programs
- Visualization: programs, graphics cards and 3D
- Computer hardware
- Operating systems and Linux distributions