Synchrotrons: Difference between revisions

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4.  The canadian light source http://www.lightsource.ca/ has at least mail in protein crystallography.  
4.  The canadian light source http://www.lightsource.ca/ has at least mail in protein crystallography.  


5.  MacCHESS http://www.macchess.cornell.edu/ does "mail-in" collection on all PX beamlines.
5.  MacCHESS http://www.macchess.cornell.edu/ does "remote" collection on MX beamline F1, monochromatic wavelength set near Se edge.


6.  All the ESRF MX/PX beamlines (ID14-1, ID14-2, ID14-4, ID23-1, ID29), and the CRG beam-line BM14, have remote access.
6.  All the ESRF MX/PX beamlines (ID14-1, ID14-2, ID14-4, ID23-1, ID29), and the CRG beam-line BM14, have remote access.
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http://www.esrf.eu/Industry/our_services/xpress-service/xpress-service
http://www.esrf.eu/Industry/our_services/xpress-service/xpress-service


7.  SEC-CAT 22-ID and 22-BM at APS http://www.ser-cat.org/ will do both mail-in and remote
7.  SEC-CAT 22-ID and 22-BM at APS http://www.ser-cat.org/ will do both mail-in (for CAT members) and remote


8.  SPring8 in Japan http://www.spring8.or.jp/en/about_us/organization/research_utilization/biology has a mail-in system.
8.  SPring8 in Japan http://www.spring8.or.jp/en/about_us/organization/research_utilization/biology has a mail-in system.
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A useful link from PDB containing synchrotron info:
A useful link from PDB containing synchrotron info:
http://biosync.rcsb.org/
http://biosync.rcsb.org/ e.g. to find info on number of solved structures, method, and so on: choose one of the structure galleries, for example Europe:
 
http://biosync.sbkb.org/stats.do?stats_sec=GALLRY&stats_focus_lvl=RGNL&stats_region=European
 
Then choose a beamline, say ID23-1:
 
http://biosync.sbkb.org/stats.do?stats_sec=GALLRY&stats_focus_lvl=BMLN&stats_site=ESRF&stats_bmln=ID23-1
 
Then, near the top of the page, see the line "Table of general information
(software, resolution, R-factors, etc) in tab delimited text format"
 
http://biosync.sbkb.org/biosync_pdbtext/measureESRFID23-1.txt
 
You'll get a table where the solution method and software follows the
PDB_ID.  There's a RELEASE DATE at the end on which you may sort.
 
 




Line 50: Line 66:
<td>URL</td>
<td>URL</td>
</b></tr>
</b></tr>
<tr>
<td>ALS</td>
<td>4.2.2 </td>
<td>Remote capabilities </td>
<td>ACTOR magazine </td>
<td> MAD </td>
<td> http://www-als.lbl.gov/als/techspecs/bl4.2.2.html  </td>
</tr>
<tr>
<b>
<td>ALS</td>
<td>ALS</td>
<td>5.0.1</td>
<td>5.0.1</td>
<td>Mail-in/ Remote</td>
<td>Mail & Remote (PRT members)</td>
<td>type of puck</td>
<td>ALS puck and Uni-puck</td>
<td>Fixed Wavelength/ Se-SAD/</td>
<td>Fixed Wavelength/ Se-SAD </td>
<td>http://bcsb.lbl.gov/beamlines.htm</td>
<td>http://bcsb.als.lbl.gov/wiki/index.php/5.0.1</td>
</b></tr>
</b></tr>
<tr>
<td>ALS </td>
<td>5.0.2 </td>
<td>Mail & Remote (PRT members) </td>
<td>ALS puck and Uni-puck</td>
<td>MAD </td>
<td>http://bcsb.als.lbl.gov/wiki/index.php/5.0.2</td>
</tr>
<tr>
<td>ALS</td>
<td>5.0.3 </td>
<td>Remote (PRT members) </td>
<td>ALS puck and Uni-puck</td>
<td> Fixed Wavelength/ Se-SAD </td>
<td>http://bcsb.als.lbl.gov/wiki/index.php/5.0.3</td>
</tr>
<td>ALS</td>
<td>8.2.1 </td>
<td>?</td>
<td>ALS Puck, Uni-Puck and ACTOR magazines</td>
<td>MAD</td>
<td>http://bcsb.als.lbl.gov/wiki/index.php/8.2.1 and [http://bcsb.als.lbl.gov/wiki/index.php/Automounter automonter] notes</td>
</tr>
<tr>
<td>ALS</td>
<td>8.2.2 </td>
<td>?</td>
<td>ALS Puck, Uni-Puck and ACTOR magazines</td>
<td>MAD</td>
<td>http://bcsb.als.lbl.gov/wiki/index.php/8.2.2 and [http://bcsb.als.lbl.gov/wiki/index.php/Automounter automonter] notes</td>
</tr>
<tr>
<td>Australian Synchrotron </td>
<td>3BM1 </td>
<td>remote </td>
<td>SSRL cassettes ? </td>
<td>MAD ?</td>
<td>http://www.synchrotron.org.au/ </td>
</tr>
<tr>
<td>Australian Synchrotron </td>
<td>3ID (2009) </td>
<td>remote </td>
<td>SSRL cassettes ? </td>
<td>MAD ?</td>
<td>http://www.synchrotron.org.au/ </td>
</tr>
<tr>
<td>BNL/NSLS </td>
<td>six PXRR beamlines</td>
<td>Mail-in </td>
<td> ? </td>
<td> ? </td>
<td>http://www.px.nsls.bnl.gov/ http://www.px.nsls.bnl.gov/Mailin.html </td>
</tr>
<tr>
<td>CLS </td>
<td> ?</td>
<td>Mail-in </td>
<td>? </td>
<td>? </td>
<td>http://www.lightsource.ca/ </td>
</tr>
<tr>
<td>MacCHESS </td>
<td>F1 </td>
<td>Remote </td>
<td>ALS puck, Uni-puck and ACTOR pucks </td>
<td>Fixed Wavelength/ Se-SAD </td>
<td>http://www.macchess.cornell.edu/ </td>
</tr>
<tr>
<td>ESRF </td>
<td>ID14-1 </td>
<td>Remote </td>
<td> ?</td>
<td> ?</td>
<td>http://www.esrf.eu/UsersAndScience/Experiments/MX/How_to_use_our_beamlines/remote-access </td>
</tr>
<tr>
<td>ESRF </td>
<td>ID14-2 </td>
<td>Remote </td>
<td> ?</td>
<td> ?</td>
<td>http://www.esrf.eu/UsersAndScience/Experiments/MX/How_to_use_our_beamlines/remote-access </td>
</tr>
<tr>
<td>ESRF </td>
<td>ID14-4 </td>
<td>Remote </td>
<td> ?</td>
<td> ?</td>
<td>http://www.esrf.eu/UsersAndScience/Experiments/MX/How_to_use_our_beamlines/remote-access </td>
</tr>
<tr>
<td>ESRF </td>
<td>ID23-1 </td>
<td>Remote </td>
<td> ?</td>
<td> ?</td>
<td>http://www.esrf.eu/UsersAndScience/Experiments/MX/How_to_use_our_beamlines/remote-access </td>
</tr>
<tr>
<td>ESRF </td>
<td>ID29 </td>
<td>Remote </td>
<td> ?</td>
<td> ?</td>
<td>http://www.esrf.eu/UsersAndScience/Experiments/MX/How_to_use_our_beamlines/remote-access </td>
</tr>
<tr>
<td>ESRF </td>
<td>BM14 </td>
<td>Remote </td>
<td> ?</td>
<td> ?</td>
<td>http://www.esrf.eu/UsersAndScience/Experiments/MX/How_to_use_our_beamlines/remote-access </td>
</tr>
<tr>
<td>ESRF </td>
<td>MXpress </td>
<td>Mail-in </td>
<td> ?</td>
<td> ?</td>
<td>http://www.esrf.eu/Industry/our_services/xpress-service/xpress-service </td>
</tr>
<tr>
<td>APS </td>
<td>SEC-CAT 22-ID </td>
<td>Mail-in & Remote </td>
<td>ALS Puck (14?)</td>
<td>MAD</td>
<td>http://www.ser-cat.org/ </td>
</tr>
<tr>
<td>APS </td>
<td>SEC-CAT 22-BM </td>
<td>Mail-in & Remote </td>
<td>ALS Puck (6)</td>
<td>MAD</td>
<td>http://www.ser-cat.org/ </td>
</tr>
<tr>
<td>Spring8 </td>
<td>? </td>
<td>Mail-in </td>
<td> ?</td>
<td> ?</td>
<td>http://www.spring8.or.jp/en/about_us/organization/research_utilization/biology </td>
</tr>
<tr>
<td>SSRL </td>
<td>all PX beamlines </td>
<td>remote </td>
<td> SSRL cassette and Uni-puck </td>
<td> 4 MAD, 2 Se-SAD </td>
<td>http://smb.slac.stanford.edu/ -- user guide[http://smb.slac.stanford.edu/public/users_guide/manual/Using_SSRL_Automated_Mounti.html automounter] and [http://smb.slac.stanford.edu/public/users_guide/manual/ contents] -- </td>
</tr>
<tr>
<td>CAMD </td>
<td>PX beamline </td>
<td>Mail-in </td>
<td> ?</td>
<td>MAD</td>
<td>http://www.camd.lsu.edu/gcpcc/GCPCChome.htm </td>
</tr>
<tr>
<td>BESSY </td>
<td>BL14.1 </td>
<td>Mail-in (industrial) </td>
<td> ? </td>
<td> ?</td>
<td>http://www.mx.bessy.de/ </td>
</tr>
<tr>
<td>BESSY </td>
<td>BL14.2 </td>
<td>Mail-in (industrial) </td>
<td> ? </td>
<td> ?</td>
<td>http://www.mx.bessy.de/ </td>
</tr>
<tr>
<td>SLS </td>
<td> ?</td>
<td>Mail-in (industrial) </td>
<td> ?</td>
<td> ?</td>
<td>http://sls.web.psi.ch/ </td>
</tr>
<tr>
<td>APS </td>
<td>IMCA-CAT 17-ID </td>
<td>Mail-in; Remote (industrial) </td>
<td>ACTOR magazines </td>
<td>MAD </td>
<td>http://www.imca.aps.anl.gov/ </td>
</tr>
<tr>
<td>APS </td>
<td>IMCA-CAT 17-BM </td>
<td>Mail-in; Remote (industrial) </td>
<td>ACTOR magazines </td>
<td>MAD </td>
<td>http://www.imca.aps.anl.gov/ </td>
</tr>
<tr>
<td> </td>
<td> </td>
<td> </td>
<td> </td>
<td> </td>
<td> </td>
</tr>
</table>
'''''Please copy and paste the empty row for the next person to fill in'''''
See also the [http://smb.slac.stanford.edu/facilities/hardware/SAM/robosync/ robosync page] on automounters at synchrotrons.

Latest revision as of 21:28, 26 January 2017

For a list of synchrotrons please see Synchrotron beamlines

The following beamlines offer mail-in service or remote access: (compiled from the CCP4 BB July 2008)

1. The ALS BCSB beamlines http://bcsb.lbl.gov/beamlines.htm have a mail-in type program name collaborative crystallography on beamlines 5.0.2 (MAD) and 5.0.1 (Se-SAD/ Fixed Wavelength). Remote access is currently available on the sector 5 stations (5.0.1 5.0.2 and 5.0.3) for PRT members only. ALS 4.2.2 beamline has remote capability

2. Beamline 3BM1 at the Australian Synchrotron http://www.synchrotron.org.au has full remote access available for users. We use the same Blu-Ice gui as SSRL and use the SAM robot. When 3ID is available for general user program (2009) it will also have full remote access capabilities.

3. BNL / NSLS Mail-in program http://www.px.nsls.bnl.gov/, where three scientists spend about one full-time equivalent of effort, employing about one full-time beamline among the six PXRR beamlines. Access to Beam Time http://www.px.nsls.bnl.gov/beamtime_requests.html Mail-in Program http://www.px.nsls.bnl.gov/Mailin.html

4. The canadian light source http://www.lightsource.ca/ has at least mail in protein crystallography.

5. MacCHESS http://www.macchess.cornell.edu/ does "remote" collection on MX beamline F1, monochromatic wavelength set near Se edge.

6. All the ESRF MX/PX beamlines (ID14-1, ID14-2, ID14-4, ID23-1, ID29), and the CRG beam-line BM14, have remote access. http://www.esrf.eu/UsersAndScience/Experiments/MX/How_to_use_our_beamlines/remote-access For industrial users there is also the MXpress mail in service: http://www.esrf.eu/Industry/our_services/xpress-service/xpress-service

7. SEC-CAT 22-ID and 22-BM at APS http://www.ser-cat.org/ will do both mail-in (for CAT members) and remote

8. SPring8 in Japan http://www.spring8.or.jp/en/about_us/organization/research_utilization/biology has a mail-in system.

9. SSRL http://smb.slac.stanford.edu/ all PX beamlines have remote capability. About 75% of the users use fully remote data collection routinely

10. CAMD's PX beamline http://www.camd.lsu.edu/gcpcc/GCPCChome.htm has a mail-in program for both consortium members and outside users.

11. BESSY BL14.1 and BL14.2 http://www.mx.bessy.de, The BESSY-MX group is offering the "mail-in" service for industrial collaborators.

12. SLS (http://sls.web.psi.ch/): For industrial users there is a Mail-In Service available since more than 3 years. For technical questions please contact Joachim Diez (Joachim.Diez@psi.ch) or Clemens Schulze-Briese (clemens.schulze@psi.ch), for questions about contracts please contact Philipp Dietrich (philipp.dietrich@psi.ch). Remote operation is in preparation for all beamlines.

A useful link from PDB containing synchrotron info: http://biosync.rcsb.org/ e.g. to find info on number of solved structures, method, and so on: choose one of the structure galleries, for example Europe:

http://biosync.sbkb.org/stats.do?stats_sec=GALLRY&stats_focus_lvl=RGNL&stats_region=European

Then choose a beamline, say ID23-1:

http://biosync.sbkb.org/stats.do?stats_sec=GALLRY&stats_focus_lvl=BMLN&stats_site=ESRF&stats_bmln=ID23-1

Then, near the top of the page, see the line "Table of general information (software, resolution, R-factors, etc) in tab delimited text format"

http://biosync.sbkb.org/biosync_pdbtext/measureESRFID23-1.txt

You'll get a table where the solution method and software follows the PDB_ID. There's a RELEASE DATE at the end on which you may sort.



Synchrotron Beamline Mail-in/ Remote type of puck Fixed Wavelength/ Se-SAD/ MAD URL
ALS 4.2.2 Remote capabilities ACTOR magazine MAD http://www-als.lbl.gov/als/techspecs/bl4.2.2.html
ALS 5.0.1 Mail & Remote (PRT members) ALS puck and Uni-puck Fixed Wavelength/ Se-SAD http://bcsb.als.lbl.gov/wiki/index.php/5.0.1
ALS 5.0.2 Mail & Remote (PRT members) ALS puck and Uni-puck MAD http://bcsb.als.lbl.gov/wiki/index.php/5.0.2
ALS 5.0.3 Remote (PRT members) ALS puck and Uni-puck Fixed Wavelength/ Se-SAD http://bcsb.als.lbl.gov/wiki/index.php/5.0.3
ALS 8.2.1 ? ALS Puck, Uni-Puck and ACTOR magazines MAD http://bcsb.als.lbl.gov/wiki/index.php/8.2.1 and automonter notes
ALS 8.2.2 ? ALS Puck, Uni-Puck and ACTOR magazines MAD http://bcsb.als.lbl.gov/wiki/index.php/8.2.2 and automonter notes
Australian Synchrotron 3BM1 remote SSRL cassettes ? MAD ? http://www.synchrotron.org.au/
Australian Synchrotron 3ID (2009) remote SSRL cassettes ? MAD ? http://www.synchrotron.org.au/
BNL/NSLS six PXRR beamlines Mail-in  ?  ? http://www.px.nsls.bnl.gov/ http://www.px.nsls.bnl.gov/Mailin.html
CLS  ? Mail-in ? ? http://www.lightsource.ca/
MacCHESS F1 Remote ALS puck, Uni-puck and ACTOR pucks Fixed Wavelength/ Se-SAD http://www.macchess.cornell.edu/
ESRF ID14-1 Remote  ?  ? http://www.esrf.eu/UsersAndScience/Experiments/MX/How_to_use_our_beamlines/remote-access
ESRF ID14-2 Remote  ?  ? http://www.esrf.eu/UsersAndScience/Experiments/MX/How_to_use_our_beamlines/remote-access
ESRF ID14-4 Remote  ?  ? http://www.esrf.eu/UsersAndScience/Experiments/MX/How_to_use_our_beamlines/remote-access
ESRF ID23-1 Remote  ?  ? http://www.esrf.eu/UsersAndScience/Experiments/MX/How_to_use_our_beamlines/remote-access
ESRF ID29 Remote  ?  ? http://www.esrf.eu/UsersAndScience/Experiments/MX/How_to_use_our_beamlines/remote-access
ESRF BM14 Remote  ?  ? http://www.esrf.eu/UsersAndScience/Experiments/MX/How_to_use_our_beamlines/remote-access
ESRF MXpress Mail-in  ?  ? http://www.esrf.eu/Industry/our_services/xpress-service/xpress-service
APS SEC-CAT 22-ID Mail-in & Remote ALS Puck (14?) MAD http://www.ser-cat.org/
APS SEC-CAT 22-BM Mail-in & Remote ALS Puck (6) MAD http://www.ser-cat.org/
Spring8 ? Mail-in  ?  ? http://www.spring8.or.jp/en/about_us/organization/research_utilization/biology
SSRL all PX beamlines remote SSRL cassette and Uni-puck 4 MAD, 2 Se-SAD http://smb.slac.stanford.edu/ -- user guideautomounter and contents --
CAMD PX beamline Mail-in  ? MAD http://www.camd.lsu.edu/gcpcc/GCPCChome.htm
BESSY BL14.1 Mail-in (industrial)  ?  ? http://www.mx.bessy.de/
BESSY BL14.2 Mail-in (industrial)  ?  ? http://www.mx.bessy.de/
SLS  ? Mail-in (industrial)  ?  ? http://sls.web.psi.ch/
APS IMCA-CAT 17-ID Mail-in; Remote (industrial) ACTOR magazines MAD http://www.imca.aps.anl.gov/
APS IMCA-CAT 17-BM Mail-in; Remote (industrial) ACTOR magazines MAD http://www.imca.aps.anl.gov/

Please copy and paste the empty row for the next person to fill in

See also the robosync page on automounters at synchrotrons.

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