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Replacing page with ''''Thi spage is now obsolete since it was creating before too much of hierarchy structure. Use the Navigation Panel in the Side Bar instead.''' --~~~~'
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'''Thi spage is now obsolete since it was creating before too much of hierarchy structure. Use the Navigation Panel in the Side Bar instead.'''
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== Expression and Purification ==
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--[[User:3ND03P|3ND03P]] 09:40, 5 March 2008 (CET)
* [[SLIC cloning]]
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* [[Tags]]
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* [[Expression systems]]
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* [[Expression screening]]
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* [[Purification]]
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* [[Cleavage: wanted and unwanted]]
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* [[DNA and DNA-binding proteins]]
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* [[Expression and Purification: Tips and Tricks]]
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== Crystals ==
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=== Crystal growth and manipulation ===
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* [[Modifying the protein to crystallize better]]
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* [[Crystallization screens and methods]]
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* [[Robots for crystallization setup]]
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* [[Biophysical methods]] for characterizing proteins and their crystals
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* [[Visualization of crystal growth]]
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* [[Robots for crystal mounting]]
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* [[Crystal growth: Tips and Tricks]]
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=== Data collection ===
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* [[X-ray generators and detectors]] (experiences)
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* [[Synchrotron beamlines]]
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* [[Cryo]]
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* [[Strategies]]
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* [[Data quality]]
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* [[Radiation damage]]
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* [[Data collection: Tips and Tricks]]
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== Crystallography ==
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=== Theory ===
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* [[Basics of Crystallography]]
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* [[Phase problem]], and [[Phasing]]
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* [[Twinning]]
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* [[R-factors]]
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* [[References and links]]
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=== Programs ===
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==== by package ====
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(large packages first)
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* [[CCP4]]
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* [[CNS]]
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* [[PHENIX]]
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* [[SHELX C/D/E/L]] (homepage at [http://shelx.uni-ac.gwdg.de/SHELX])
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* moleman, lsqman, ... from [http://xray.bmc.uu.se/usf/ Uppsala Software Factory]
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* XDS [http://www.mpimf-heidelberg.mpg.de/~kabsch/xds homepage] and [http://strucbio.biologie.uni-konstanz.de/xdswiki/index.php/XDS XDSwiki]
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* HKL [http://www.hkl-xray.com homepage]
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* [[COOT]]
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* [http://www.pymolwiki.org/index.php/Main_Page PyMol] wiki
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* [[O]]
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* [[ARP/wARP]]
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* [[SHARP]] [http://www.globalphasing.com homepage]
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* [http://www.solve.lanl.gov/index.html Solve/Resolve]
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* ...
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==== by task ====
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* [[Data reduction]]
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* [[Molecular replacement]] (MR)
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* [[Experimental phasing (SIR/MIR and SAD/MAD)]]
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* [[Model building]]
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* [[Refinement]]
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* [[Model validation]]
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* [[Solving a structure: Tips and Tricks]]
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* [[Model building and refinement: Tricks and Tips]]
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== Bioinformatics ==
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* [[Servers and programs for sequence analysis]]
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* [[Structure based sequence alignment]]
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* [[Servers for structure analysis|Servers and programs for protein structure analysis]]
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* [[Programs for nucleic acid structure analysis|Programs for nucleic acid structure analysis]]
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* [[Servers for ligand topologies/parameters]]
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* [[Prediction of structure from sequence: servers and programs]]
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* [[Programs for visualization]] (see also [[Model building]])
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* [[Links to Bioinformatics websites]]
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== Hardware: computing and displaying ==
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* [[Computer hardware]]
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* [[Operating systems and Linux distributions]]
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* [[Programming and programming languages]]
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* [[Visualization: graphics cards and 3D|Graphics cards and 3D]]
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== FAQ and troubleshooting ==
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* [[Expression and Purification: Tips and Tricks|protein is not expressed or cannot be purified]]
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* [[Crystal growth: Tips and Tricks|crystals don't grow]]
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* [[Solving a structure: Tips and Tricks|phases too bad]]
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* [[Model building and refinement: Tricks and Tips|model does not refine]]
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== See also ==
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* [[Teaching crystallography]]
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* [[Other crystallography links, or collections of links]]
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* [[Other crystallography wikis]]
 
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