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1,065 bytes added ,  07:30, 11 July 2015
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A: It used to be 0.167, I think.
 
A: It used to be 0.167, I think.
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== Molprobity not active in COOT ==
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Q: I am using COOT 0.8.1 EL that comes with the CCP4 6.5.010 on my Mac OS X 10.10.2. I wanted to run molprobity but the Validate > Probe clashes button in my pull down menu is not active. Is this function available in this COOT version?
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A: Reduce and probe are separate programs available from the Richardson’s lab at Duke http://kinemage.biochem.duke.edu/. Download and install on your box. Then coot needs to be told in some instances where it can find these executables. I have the following lines in my ~/.coot file in Linux.
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<pre>
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;; .coot
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;; This file is required. As of coot 0.8pre no other mechanism for
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;; enabling probe in coot works
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;;
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;; This is full pathname of molprobity's probe program
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(define *probe-command* "/apps/xray/bin/probe")
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;; This is full pathname of molprobity's reduce program
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(define *reduce-command* "/apps/xray/bin/reduce")
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</pre>
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Untried: if you have Phenix installed: it comes with phenix.probe and phenix.reduce - you could insert the paths to these binaries into the above definitions.
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