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Servers and programs for sequence analysis

30 bytes removed, 14:24, 12 February 2008
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:* [http://xray.bmc.uu.se/dennis/ Indonesia] Java structure-based sequence alignment
:* [http://www.jalview.org/download.html Jalview] Java tool for MSA viewing, analysis and creation of publication-quality plots. Can run Clustalw, MAFFT and MUSCLE alignments.
:* [http://phylogenomicswww.berkeleyebi.edu/cgi-binac.uk/muscle/input_muscle.py MUSCLE] Multiple sequence comparison by log-expectation@ EBI
:* [http://timpani.genome.ad.jp/%7Emafft/server/ MAFFT] Multiple sequence alignment and NJ / UPGMA phylogeny
:* [http://bioinfo.genopole-toulouse.prd.fr/multalin/multalin.html Multalin] Multiple sequence alignment with hierarchical clustering
:* [http://igs-server.cnrs-mrs.fr/Tcoffee/tcoffee_cgi/index.cgi Tcoffee] A novel method for multiple sequence alignments. 3DCoffee mode performs structure-based sequence alignments
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