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Bioinformatics: Difference between revisions
→Structure only
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* [http://www.ebi.ac.uk/thornton-srv/databases/procognate/ database of cognate ligands for the domains of enzyme structures in CATH, SCOP and Pfam] | * [http://www.ebi.ac.uk/thornton-srv/databases/procognate/ database of cognate ligands for the domains of enzyme structures in CATH, SCOP and Pfam] | ||
* [http://robetta.bakerlab.org/alascansubmit.jsp Rosetta Alanine Scanning] each residue in a interface is mutated to Ala; local minimisation is performed, and the binding energy is calculated | * [http://robetta.bakerlab.org/alascansubmit.jsp Rosetta Alanine Scanning] each residue in a interface is mutated to Ala; local minimisation is performed, and the binding energy is calculated | ||
== Functional annotation == | |||
* [http://godot.bioinf.mpi-inf.mpg.de GOdot] webserver for predicting function from structure (see http://dx.plos.org/10.1371%2Fjournal.pcbi.1000105) | * [http://godot.bioinf.mpi-inf.mpg.de GOdot] webserver for predicting function from structure (see http://dx.plos.org/10.1371%2Fjournal.pcbi.1000105) | ||
* [http://www.ebi.ac.uk/thornton-srv/databases/ProFunc/ ProFunc] Analysis of a protein's 3D structure to help identify its likely biochemical function | |||
* [http://kb.psi-structuralgenomics.org/KB/index1.jsp?pageshow=39 Annotation] PSI Stuctural Genomics knowledgebase | |||
=== Docking === | === Docking === | ||