Programming and programming languages
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Learning C++
- Kevin Cowtan's primer at http://www.ysbl.york.ac.uk/~cowtan/lectures/kdc05cplusplus.pdf
- FAQ : http://www.parashift.com/c++-faq-lite/
Learning Fortran
- http://en.wikipedia.org/wiki/Fortran (History), http://en.wikipedia.org/wiki/Fortran_language_features , https://en.wikipedia.org/wiki/Fortran_95_language_features (by Michael Metcalf)
- http://www.ibiblio.org/pub/languages/fortran/unfp.html
- http://math.scu.edu/~dsmolars/ma169/notesfortran.html
- List of Fortran tutorials
- http://fortranwiki.org/fortran/show/Tutorials
Learning Python
An interpreted alternative to C++ and Fortran, which makes it easier to write quick programs.
- http://docs.python.org/tut/
- http://en.wikibooks.org/wiki/Non-Programmer's_Tutorial_for_Python/Contents
- "Learning Python" book, by Mark Lutz
R
Originally a statistics package, is very powerful for data analysis and visualization.
- Bio3D - an R package containing utilities for the analysis of protein structure and sequence data