Phenix: Revision history

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curprev 18:0118:01, 4 March 2021‎ Kay talk contribs‎ 52,301 bytes −1‎ →‎phenix.elbow - electronic Ligand Builder and Optimisation Workbench undo

curprev 12:0312:03, 26 August 2020‎ Kay talk contribs‎ 52,302 bytes +625‎ →‎Tips and Tricks: regression tests undo

curprev 19:2019:20, 1 July 2020‎ Kay talk contribs‎ 51,677 bytes −4‎ →‎NCS: try to correct undo

curprev 17:5817:58, 3 June 2020‎ Kay talk contribs‎ 51,681 bytes +740‎ →‎Special positions: Bond across symmetry axis undo

curprev 15:2915:29, 29 July 2019‎ Kay talk contribs‎ 50,941 bytes +3‎ →‎TLS undo

curprev 12:3212:32, 9 May 2019‎ Kay talk contribs‎ 50,938 bytes +9‎ →‎Ligands undo

curprev 21:3121:31, 1 April 2019‎ Kay talk contribs‎ 50,929 bytes +122‎ link to phenixBB added undo
curprev 21:2221:22, 1 April 2019‎ Kay talk contribs‎ 50,807 bytes +639‎ →‎phenix.elbow - electronic Ligand Builder and Optimisation Workbench: according to phenixBB 1.4.2019 undo

curprev 10:4410:44, 15 January 2019‎ Kay talk contribs‎ 50,168 bytes +467‎ →‎Occupancy undo
curprev 10:3810:38, 15 January 2019‎ Kay talk contribs‎ 49,701 bytes +258‎ →‎Switching off specific interactions undo

curprev 15:4415:44, 2 December 2018‎ Kay talk contribs‎ 49,443 bytes +24‎ →‎Installation from source, and of Rosetta interface undo
curprev 15:1315:13, 2 December 2018‎ Kay talk contribs‎ 49,419 bytes +17‎ →‎Installation from source, and of Rosetta interface undo
curprev 13:2213:22, 2 December 2018‎ Kay talk contribs‎ 49,402 bytes −26‎ →‎Installation from source, and of Rosetta interface undo

curprev 18:0418:04, 7 July 2018‎ Kay talk contribs‎ 49,428 bytes +3‎ →‎Hydrogens undo
curprev 16:5716:57, 7 July 2018‎ Kay talk contribs‎ 49,425 bytes −1,334‎ →‎Refinement with mmtbx.lockit: remove undo

curprev 13:4513:45, 6 July 2018‎ Kay talk contribs‎ 50,759 bytes +11‎ →‎TLS undo

curprev 13:2113:21, 24 January 2018‎ Kay talk contribs‎ 50,748 bytes −83‎ →‎NCS undo

curprev 10:2310:23, 28 May 2017‎ Kay talk contribs‎ 50,598 bytes +98‎ →‎Installation from source, and of Rosetta interface undo

curprev 08:1808:18, 22 May 2017‎ Kay talk contribs‎ 50,500 bytes −268‎ →‎Installation from source, and of Rosetta interface undo

curprev 22:0922:09, 20 June 2016‎ Kay talk contribs‎ 50,768 bytes −25‎ →‎Using a reference model: upate syntax undo

curprev 17:2217:22, 13 October 2015‎ Kay talk contribs‎ 50,793 bytes +94‎ →‎NCS undo

curprev 20:4520:45, 30 May 2015‎ Kay talk contribs‎ 50,699 bytes +122‎ →‎advanced usage undo

curprev 14:4614:46, 29 May 2015‎ Kay talk contribs‎ 50,577 bytes −122‎ →‎phaser.brunett undo

curprev 10:1710:17, 29 April 2015‎ Kay talk contribs‎ 50,699 bytes −65‎ →‎phenix.polygon undo

curprev 12:2712:27, 22 April 2015‎ Kay talk contribs‎ 50,764 bytes +76‎ →‎Atom selection undo

curprev 09:5209:52, 19 March 2015‎ Kay talk contribs‎ 50,688 bytes +75‎ →‎Installation from source, and of Rosetta interface undo

curprev 20:5320:53, 18 March 2015‎ Kay talk contribs‎ 50,613 bytes +1,841‎ Installation from source, and of Rosetta interface undo

curprev 12:4812:48, 24 January 2015‎ Kay talk contribs‎ 48,772 bytes +1,538‎ →‎Crystallographic data undo

curprev 05:0205:02, 18 January 2015‎ Kay talk contribs‎ 47,234 bytes +195‎ →‎phenix.pbdtools - PDB model manipulations and statistics undo
curprev 04:5604:56, 18 January 2015‎ Kay talk contribs‎ 47,039 bytes +176‎ →‎Atom selection undo

curprev 12:1712:17, 10 December 2014‎ Kay talk contribs‎ 46,863 bytes +10‎ →‎phenix.fmodel - calculate structure factors from model undo
curprev 11:1411:14, 10 December 2014‎ Kay talk contribs‎ 46,853 bytes +40‎ →‎NCS undo

curprev 12:0912:09, 21 March 2014‎ Kay talk contribs‎ 46,813 bytes −195‎ →‎phenix.phaser - SAD phasing with Phaser undo

curprev 15:0215:02, 10 March 2014‎ Kay talk contribs‎ 47,008 bytes +14,444‎ new: List of programs undo

curprev 13:0813:08, 11 January 2014‎ Kay talk contribs‎ 32,564 bytes +42‎ →‎phenix.explore_metric_symmetry - investigate different settings: link to othercell doc undo

curprev 21:3821:38, 1 May 2013‎ Kay talk contribs‎ 32,522 bytes +340‎ →‎Validation undo

curprev 02:2802:28, 17 February 2013‎ Kay talk contribs‎ 32,182 bytes +100‎ →‎TLS undo

curprev 12:5112:51, 18 November 2012‎ Kay talk contribs‎ 32,082 bytes +272‎ phenix.pdb_atom_selection undo

curprev 15:1615:16, 3 August 2012‎ Kay talk contribs‎ 31,810 bytes +385‎ →‎An experimental feature currently being worked on undo

curprev 08:2508:25, 5 July 2012‎ Kay talk contribs‎ 31,425 bytes +534‎ →‎TLS undo
curprev 08:2508:25, 5 July 2012‎ Kay talk contribs‎ 30,891 bytes −195‎ →‎advanced usage undo

curprev 21:3521:35, 3 May 2012‎ Kay talk contribs‎ 31,086 bytes +247‎ phenix.ksdssp undo

curprev 17:5417:54, 16 April 2012‎ Kay talk contribs‎ 30,839 bytes +11‎ →‎advanced usage: new nomenclature: optimize_xyz_weight=true optimize_adp_weight=true undo

curprev 10:3310:33, 23 March 2012‎ Kay talk contribs‎ 30,828 bytes +67‎ →‎phenix.clashscore undo

curprev 16:5716:57, 21 March 2012‎ Kay talk contribs‎ 30,761 bytes +174‎ →‎phenix.apply_ncs - applying NCS to a molecule to generate all NCS copies undo

curprev 09:1609:16, 20 March 2012‎ Kay talk contribs‎ 30,587 bytes +132‎ →‎NCS undo

curprev 22:1322:13, 26 January 2012‎ Kay talk contribs‎ 30,455 bytes +2,041‎ →‎Low resolution refinement undo

curprev 16:2516:25, 11 November 2011‎ Kay talk contribs‎ 28,414 bytes +170‎ →‎Validation: phenix.r_factor_statistics undo

curprev 12:3812:38, 27 October 2011‎ 3ND03P talk contribs‎ 28,244 bytes −96‎ →‎phenix.pbdtools - PDB model manipulations and statistics undo

curprev 10:2210:22, 9 October 2011‎ Kay talk contribs‎ m 28,340 bytes +153‎ →‎Atom selection: add example undo

curprev 08:4908:49, 27 September 2011‎ Kay talk contribs‎ 28,187 bytes +683‎ →‎An experimental feature currently being worked on undo
curprev 08:2208:22, 27 September 2011‎ Kay talk contribs‎ 27,504 bytes +14‎ →‎phenix.grow_density - local density improvement undo

curprev 10:0310:03, 1 September 2011‎ Kay talk contribs‎ 27,490 bytes +655‎ →‎phenix.model_vs_data - statistics undo

curprev 20:4720:47, 11 August 2011‎ Kay talk contribs‎ 26,835 bytes +520‎ →‎phenix.grow_density - local density improvement undo

curprev 21:4821:48, 7 August 2011‎ Kay talk contribs‎ 26,315 bytes +17‎ →‎Using a reference model undo
curprev 19:5019:50, 7 August 2011‎ Kay talk contribs‎ 26,298 bytes +513‎ →‎Fix His/Asn/Gln sidechain orientations undo

curprev 08:3508:35, 6 August 2011‎ Kay talk contribs‎ 25,785 bytes +243‎ →‎phenix.tls - tool to convert between total and residual ADPs undo

curprev 21:2521:25, 22 July 2011‎ Kay talk contribs‎ 25,542 bytes +122‎ →‎phenix.automr - interface to Phaser and Resolve: brunett undo
curprev 19:5819:58, 22 July 2011‎ Kay talk contribs‎ 25,420 bytes +194‎ →‎phenix.find_tls_groups: data_viewer undo

curprev 21:0121:01, 11 July 2011‎ Kay talk contribs‎ 25,226 bytes +113‎ →‎phenix.apply_ncs - applying NCS to a molecule to generate all NCS copies undo
curprev 21:0021:00, 11 July 2011‎ Kay talk contribs‎ 25,113 bytes +119‎ →‎phenix.find_ncs - identification of NCS operators undo

curprev 17:0917:09, 1 June 2011‎ Kay talk contribs‎ 24,994 bytes +105‎ →‎TLS undo

curprev 09:3809:38, 19 May 2011‎ Kay talk contribs‎ 24,889 bytes +745‎ →‎phenix.mtz2map undo

curprev 12:1912:19, 2 May 2011‎ Kay talk contribs‎ 24,144 bytes +493‎ →‎phenix.phaser undo

curprev 18:5618:56, 1 May 2011‎ Kay talk contribs‎ 23,651 bytes +2,587‎ →‎phenix.autosol - experimental phasing "wizard" undo

curprev 09:0709:07, 7 April 2011‎ Kay talk contribs‎ 21,064 bytes +109‎ →‎An experimental feature currently being worked on undo
curprev 09:0409:04, 7 April 2011‎ Kay talk contribs‎ 20,955 bytes +202‎ →‎Switching off specific interactions undo

curprev 10:4810:48, 25 February 2011‎ Kay talk contribs‎ 20,753 bytes +126‎ →‎phenix.model_vs_data - statistics undo

curprev 23:5623:56, 12 February 2011‎ Kay talk contribs‎ 20,627 bytes +37‎ →‎phenix.explore_metric_symmetry - investigate different settings undo

curprev 17:3917:39, 9 January 2011‎ Kay talk contribs‎ 20,590 bytes +70‎ No edit summary undo
curprev 17:3717:37, 9 January 2011‎ Kay talk contribs‎ 20,520 bytes +119‎ →‎phenix.grow_density - local density improvement undo

curprev 13:3713:37, 5 January 2011‎ Kay talk contribs‎ 20,401 bytes +56‎ →‎phenix.real_space_correlation - compute correlation between two maps undo
curprev 13:3513:35, 5 January 2011‎ Kay talk contribs‎ 20,345 bytes +128‎ →‎phenix.model_vs_data - statistics undo

curprev 23:2223:22, 21 December 2010‎ Kay talk contribs‎ 20,217 bytes +164‎ →‎Crystallographic data undo
curprev 23:1923:19, 21 December 2010‎ Kay talk contribs‎ 20,053 bytes +361‎ →‎See also undo

curprev 13:0313:03, 8 December 2010‎ Kay talk contribs‎ 19,692 bytes 0‎ →‎Switching off specific interactions undo
curprev 12:2412:24, 8 December 2010‎ Kay talk contribs‎ 19,692 bytes +206‎ →‎Switching off specific interactions undo

curprev 22:2322:23, 5 December 2010‎ Kay talk contribs‎ 19,486 bytes +548‎ →‎Low resolution refinement undo

curprev 17:3317:33, 3 December 2010‎ Kay talk contribs‎ 18,938 bytes +303‎ add phenix.pdb_interpretation undo

curprev 09:5609:56, 25 November 2010‎ Kay talk contribs‎ 18,635 bytes +406‎ →‎phenix.superpose_ligands - Superposition of ligands undo

curprev 12:2912:29, 14 November 2010‎ Kay talk contribs‎ 18,229 bytes +153‎ No edit summary undo
curprev 12:0012:00, 14 November 2010‎ Kay talk contribs‎ 18,076 bytes +1,333‎ →‎Switching off specific interactions undo

curprev 14:4414:44, 22 September 2010‎ Kay talk contribs‎ 16,743 bytes +201‎ →‎phenix.phaser undo

curprev 21:0721:07, 8 September 2010‎ Kay talk contribs‎ 16,542 bytes +267‎ →‎phenix.model_vs_data - statistics undo

curprev 22:2722:27, 7 September 2010‎ Kay talk contribs‎ 16,275 bytes +172‎ →‎See also undo

curprev 22:1122:11, 4 September 2010‎ Kay talk contribs‎ 16,103 bytes +567‎ →‎Occupancy undo
curprev 20:1520:15, 4 September 2010‎ Kay talk contribs‎ 15,536 bytes +18‎ →‎phenix.superpose_ligands - Superposition of ligands undo
curprev 16:2016:20, 4 September 2010‎ Kay talk contribs‎ 15,518 bytes +109‎ →‎Model analysis and manipulation: add phenix.superpose_ligands undo

curprev 21:4021:40, 29 August 2010‎ Kay talk contribs‎ 15,409 bytes +404‎ →‎phenix.automr - interface to Phaser and Resolve: add phenix.phaser undo

curprev 10:0810:08, 28 August 2010‎ Kay talk contribs‎ 15,005 bytes +11‎ No edit summary undo
curprev 10:0310:03, 28 August 2010‎ Kay talk contribs‎ 14,994 bytes +357‎ →‎Atom selection undo

curprev 16:3016:30, 27 August 2010‎ Kay talk contribs‎ 14,637 bytes −76‎ →‎phenix.phase_and_build and phenix.build_one_model - fast autobuild undo
curprev 16:2116:21, 27 August 2010‎ Kay talk contribs‎ 14,713 bytes +91‎ No edit summary undo
curprev 10:2310:23, 27 August 2010‎ Kay talk contribs‎ 14,622 bytes +111‎ →‎Crystallographic data undo
curprev 09:5609:56, 27 August 2010‎ Kay talk contribs‎ 14,511 bytes +284‎ →‎Atom selection: real-space refinement undo

curprev 20:0620:06, 18 August 2010‎ Kay talk contribs‎ 14,227 bytes +2‎ No edit summary undo
curprev 20:0120:01, 18 August 2010‎ Kay talk contribs‎ 14,225 bytes −124‎ No edit summary undo
curprev 11:3511:35, 18 August 2010‎ Kay talk contribs‎ 14,349 bytes +62‎ re-organization undo

curprev 14:5714:57, 15 August 2010‎ Kay talk contribs‎ 14,287 bytes +1,039‎ No edit summary undo
curprev 13:2613:26, 15 August 2010‎ Kay talk contribs‎ 13,248 bytes +2,319‎ completion and re-organization of first part of article undo

curprev 12:4312:43, 14 August 2010‎ Kay talk contribs‎ 10,929 bytes +93‎ No edit summary undo
curprev 12:3012:30, 14 August 2010‎ Kay talk contribs‎ 10,836 bytes +943‎ No edit summary undo

curprev 11:1711:17, 12 August 2010‎ Kay talk contribs‎ 9,893 bytes +356‎ No edit summary undo
curprev 10:2510:25, 12 August 2010‎ Kay talk contribs‎ 9,537 bytes +586‎ →‎See also undo

curprev 15:1615:16, 9 August 2010‎ Kay talk contribs‎ 8,951 bytes +200‎ No edit summary undo

curprev 22:3122:31, 6 August 2010‎ Kay talk contribs‎ 8,751 bytes +757‎ phenix.model_vs_data undo

curprev 19:5619:56, 4 August 2010‎ Kay talk contribs‎ 7,994 bytes +217‎ more tools undo
curprev 19:2219:22, 4 August 2010‎ Kay talk contribs‎ 7,777 bytes +315‎ add more phenix tools undo

curprev 22:3422:34, 30 July 2010‎ Kay talk contribs‎ 7,462 bytes +668‎ →‎See also undo

curprev 21:3921:39, 17 July 2010‎ Kay talk contribs‎ 6,794 bytes +62‎ →‎See also undo
curprev 21:3821:38, 17 July 2010‎ Kay talk contribs‎ 6,732 bytes +166‎ →‎Secondary structure restraints: Newsletter undo
curprev 21:3521:35, 17 July 2010‎ Kay talk contribs‎ 6,566 bytes +269‎ No edit summary undo

curprev 08:2008:20, 3 April 2010‎ Kay talk contribs‎ 6,297 bytes +94‎ No edit summary undo

curprev 16:5016:50, 15 December 2009‎ Kay talk contribs‎ 6,203 bytes +51‎ →‎See also undo

curprev 09:1909:19, 3 November 2009‎ Kay talk contribs‎ 6,152 bytes −33‎ No edit summary undo

curprev 10:4210:42, 14 September 2009‎ Kay talk contribs‎ 6,185 bytes +76‎ No edit summary undo

curprev 16:1616:16, 31 July 2009‎ Kay talk contribs‎ 6,109 bytes +414‎ →‎Switching off specific interactions undo
curprev 16:1216:12, 31 July 2009‎ Kay talk contribs‎ 5,695 bytes +203‎ No edit summary undo

curprev 23:3123:31, 22 July 2009‎ Kay talk contribs‎ 5,492 bytes +82‎ →‎See also undo

curprev 11:2211:22, 8 May 2009‎ Samra talk contribs‎ 5,410 bytes +362‎ No edit summary undo

curprev 15:4015:40, 22 April 2009‎ Kay talk contribs‎ m 5,048 bytes +68‎ put link to homepage nearer to top undo

curprev 11:3211:32, 31 March 2009‎ Kay talk contribs‎ 4,980 bytes +266‎ remove duplicate pdbtools example, add phenix.explore_metric_symmetry undo

curprev 15:2715:27, 27 March 2009‎ Kay talk contribs‎ 4,714 bytes +258‎ No edit summary undo

curprev 17:0517:05, 26 March 2009‎ Kay talk contribs‎ 4,456 bytes −2‎ →‎TLS undo
curprev 17:0417:04, 26 March 2009‎ Kay talk contribs‎ 4,458 bytes −161‎ remove duplicate NCS entry; add entry about bond modifications etc undo

curprev 16:0516:05, 20 March 2009‎ Kay talk contribs‎ m 4,619 bytes +621‎ →‎TLS: add example for rigid body and NCS definition undo
curprev 16:0216:02, 20 March 2009‎ Kay talk contribs‎ m 3,998 bytes +113‎ →‎TLS: example for .def file undo

curprev 18:3918:39, 8 March 2009‎ Kay talk contribs‎ m 3,885 bytes +9‎ cosmetic undo

curprev 22:5522:55, 3 March 2009‎ Kay talk contribs‎ m 3,876 bytes +351‎ add phenix.reduce, occupancy, mailing list undo

curprev 14:1114:11, 10 December 2008‎ Kay talk contribs‎ m 3,525 bytes +125‎ add phenix.elbow link undo

curprev 17:3617:36, 17 October 2008‎ Kay talk contribs‎ 3,400 bytes +401‎ →‎NCS undo

curprev 10:3810:38, 5 June 2008‎ Kay talk contribs‎ m 2,999 bytes +444‎ No edit summary undo
curprev 09:2809:28, 5 June 2008‎ Kay talk contribs‎ m 2,555 bytes 0‎ PHENIX moved to Phenix: better to find if both spellings present; l/c makes more sense anyway undo

curprev 22:5022:50, 26 March 2008‎ Kay talk contribs‎ m 2,555 bytes +69‎ No edit summary undo
curprev 20:4720:47, 26 March 2008‎ Kay talk contribs‎ m 2,486 bytes +331‎ No edit summary undo

curprev 15:0715:07, 19 March 2008‎ Kay talk contribs‎ m 2,155 bytes +14‎ →‎Example undo
curprev 15:0715:07, 19 March 2008‎ Kay talk contribs‎ m 2,141 bytes +423‎ No edit summary undo

curprev 21:4321:43, 22 February 2008‎ Kay talk contribs‎ m 1,718 bytes +734‎ →‎Example undo
curprev 10:2810:28, 22 February 2008‎ Kay talk contribs‎ m 984 bytes +605‎ No edit summary undo

curprev 05:0805:08, 10 February 2008‎ Wgscott talk contribs‎ m 379 bytes +67‎ No edit summary undo
curprev 04:2404:24, 10 February 2008‎ Wgscott talk contribs‎ 312 bytes +312‎ New page: PHENIX is a new software suite for the automated determination and refinement of macromolecular structures using X-ray crystallography and other methods. It integrates well with CCP4-form...

Phenix: Revision history

4 March 2021

26 August 2020

1 July 2020

3 June 2020

29 July 2019

9 May 2019

1 April 2019

15 January 2019

2 December 2018

7 July 2018

6 July 2018

24 January 2018

22 December 2017

28 May 2017

22 May 2017

20 June 2016

13 October 2015

30 May 2015

29 May 2015

29 April 2015

22 April 2015

19 March 2015

18 March 2015

24 January 2015

18 January 2015

10 December 2014

21 March 2014

10 March 2014

11 January 2014

1 May 2013

17 February 2013

18 November 2012

3 August 2012

5 July 2012

3 May 2012

16 April 2012

23 March 2012

21 March 2012

20 March 2012

26 January 2012

11 November 2011

27 October 2011

9 October 2011

27 September 2011

1 September 2011

11 August 2011

7 August 2011

6 August 2011

22 July 2011

11 July 2011

1 June 2011

19 May 2011

2 May 2011

1 May 2011

7 April 2011

25 February 2011

12 February 2011

9 January 2011

5 January 2011

21 December 2010

8 December 2010

5 December 2010

3 December 2010

25 November 2010

14 November 2010

22 September 2010

8 September 2010

7 September 2010

4 September 2010

29 August 2010

28 August 2010

27 August 2010

18 August 2010

15 August 2010

14 August 2010

12 August 2010

9 August 2010

6 August 2010

4 August 2010