Model Evaluation: Difference between revisions
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* [http://www.ccp4.ac.uk/dist/html/sfcheck.html sfcheck] - run CCP4Online sfcheck | * [http://www.ccp4.ac.uk/dist/html/sfcheck.html sfcheck] - run CCP4Online sfcheck | ||
* [http://sts.bioengr.uic.edu/castp/index.php CASTp] - webserver for identification and measurements of surface accessible pockets as well as interior | * [http://sts.bioengr.uic.edu/castp/index.php CASTp] - webserver for identification and measurements of surface accessible pockets as well as interior | ||
* [http://www.biochem.ucl.ac.uk/bsm/ligplot/manual/man8.html DIMPLOT ]- Interactions between monomers of a dimer | * [http://www.biochem.ucl.ac.uk/bsm/ligplot/manual/man8.html DIMPLOT ]- Interactions between monomers of a dimer | ||
Revision as of 11:06, 7 March 2008
- sfcheck - run CCP4Online sfcheck
- CASTp - webserver for identification and measurements of surface accessible pockets as well as interior
- DIMPLOT - Interactions between monomers of a dimer
- FADE and PADRE - Shape and Complementarity Server
- GRASP
- LIGPLOT - Interactions around a ligand of piece of structure
- NACCESS - Surface area calculaitons, per residue, or atom
- NCONT - (ccp4) analyses contacts between subsets of atoms in a PDB file
- Protein-Protein Interaction Server - stats on your chain interfaces and to obtain surface calculations
- PARVATI - anisotropic displacement parameters statistics
- [1] - SURFACE and AREAIMOL (ccp4) -surface programs
- VOIDOO - look for interior cavities
- VADAR - (Volume, Area, Dihedral Angle Reporter)
STING Millenium - web-based suite of programs for visualizing molecular structure and comprehensive structure analysis:inaccessible cavities